Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9A entry

There are 6 chains in PDB entry 5E9A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ILE 685
B	THR 2	ILE 685
C	THR 2	ILE 685
D	THR 2	ILE 685
E	THR 2	ILE 685
F	THR 2	ILE 685

There are142 helices in PDB entry 5E9A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	25	Right-handed 310
Helix 2	AA2	A	28	42	Right-handed alpha
Helix 3	AA3	A	53	58	Right-handed alpha
Helix 4	AA4	A	66	79	Right-handed alpha
Helix 5	AA5	A	93	100	Right-handed alpha
Helix 6	AA6	A	101	104	Right-handed 310
Helix 7	AA7	A	125	144	Right-handed alpha
Helix 8	AA8	A	164	179	Right-handed alpha
Helix 9	AA9	A	181	190	Right-handed alpha
Helix 10	AB1	A	192	196	Right-handed 310
Helix 11	AB2	A	200	204	Right-handed 310
Helix 12	AB3	A	215	245	Right-handed alpha
Helix 13	AB4	A	262	267	Right-handed alpha
Helix 14	AB5	A	268	270	Right-handed 310
Helix 15	AB6	A	287	304	Right-handed alpha
Helix 16	AB7	A	332	344	Right-handed alpha
Helix 17	AB8	A	377	392	Right-handed alpha
Helix 18	AB9	A	393	397	Right-handed 310
Helix 19	AC1	A	410	420	Right-handed alpha
Helix 20	AC2	A	429	443	Right-handed alpha
Helix 21	AC3	A	474	485	Right-handed alpha
Helix 22	AC4	A	510	512	Right-handed 310
Helix 23	AC5	A	513	518	Right-handed alpha
Helix 24	AC6	A	598	614	Right-handed alpha
Helix 25	AC7	B	21	25	Right-handed 310
Helix 26	AC8	B	28	42	Right-handed alpha
Helix 27	AC9	B	53	58	Right-handed alpha
Helix 28	AD1	B	66	79	Right-handed alpha
Helix 29	AD2	B	93	100	Right-handed alpha
Helix 30	AD3	B	101	104	Right-handed 310
Helix 31	AD4	B	125	144	Right-handed alpha
Helix 32	AD5	B	164	179	Right-handed alpha
Helix 33	AD6	B	181	189	Right-handed alpha
Helix 34	AD7	B	192	196	Right-handed 310
Helix 35	AD8	B	200	204	Right-handed 310
Helix 36	AD9	B	215	245	Right-handed alpha
Helix 37	AE1	B	262	267	Right-handed alpha
Helix 38	AE2	B	268	270	Right-handed 310
Helix 39	AE3	B	287	304	Right-handed alpha
Helix 40	AE4	B	332	344	Right-handed alpha
Helix 41	AE5	B	377	393	Right-handed alpha
Helix 42	AE6	B	394	397	Right-handed 310
Helix 43	AE7	B	410	420	Right-handed alpha
Helix 44	AE8	B	429	443	Right-handed alpha
Helix 45	AE9	B	474	485	Right-handed alpha
Helix 46	AF1	B	510	512	Right-handed 310
Helix 47	AF2	B	513	518	Right-handed alpha
Helix 48	AF3	B	598	614	Right-handed alpha
Helix 49	AF4	C	21	25	Right-handed 310
Helix 50	AF5	C	28	42	Right-handed alpha
Helix 51	AF6	C	53	58	Right-handed alpha
Helix 52	AF7	C	66	79	Right-handed alpha
Helix 53	AF8	C	93	100	Right-handed alpha
Helix 54	AF9	C	101	104	Right-handed 310
Helix 55	AG1	C	125	144	Right-handed alpha
Helix 56	AG2	C	164	180	Right-handed alpha
Helix 57	AG3	C	181	190	Right-handed alpha
Helix 58	AG4	C	192	196	Right-handed 310
Helix 59	AG5	C	200	204	Right-handed 310
Helix 60	AG6	C	215	245	Right-handed alpha
Helix 61	AG7	C	262	268	Right-handed alpha
Helix 62	AG8	C	287	304	Right-handed alpha
Helix 63	AG9	C	332	344	Right-handed alpha
Helix 64	AH1	C	377	393	Right-handed alpha
Helix 65	AH2	C	394	397	Right-handed 310
Helix 66	AH3	C	410	420	Right-handed alpha
Helix 67	AH4	C	429	443	Right-handed alpha
Helix 68	AH5	C	474	485	Right-handed alpha
Helix 69	AH6	C	510	512	Right-handed 310
Helix 70	AH7	C	513	518	Right-handed alpha
Helix 71	AH8	C	598	614	Right-handed alpha
Helix 72	AH9	D	21	25	Right-handed 310
Helix 73	AI1	D	28	42	Right-handed alpha
Helix 74	AI2	D	53	58	Right-handed alpha
Helix 75	AI3	D	66	79	Right-handed alpha
Helix 76	AI4	D	93	100	Right-handed alpha
Helix 77	AI5	D	101	104	Right-handed 310
Helix 78	AI6	D	125	144	Right-handed alpha
Helix 79	AI7	D	164	179	Right-handed alpha
Helix 80	AI8	D	181	190	Right-handed alpha
Helix 81	AI9	D	192	196	Right-handed 310
Helix 82	AJ1	D	200	204	Right-handed 310
Helix 83	AJ2	D	215	245	Right-handed alpha
Helix 84	AJ3	D	262	267	Right-handed alpha
Helix 85	AJ4	D	268	270	Right-handed 310
Helix 86	AJ5	D	287	304	Right-handed alpha
Helix 87	AJ6	D	332	344	Right-handed alpha
Helix 88	AJ7	D	377	392	Right-handed alpha
Helix 89	AJ8	D	393	397	Right-handed 310
Helix 90	AJ9	D	410	420	Right-handed alpha
Helix 91	AK1	D	429	443	Right-handed alpha
Helix 92	AK2	D	474	485	Right-handed alpha
Helix 93	AK3	D	510	512	Right-handed 310
Helix 94	AK4	D	513	518	Right-handed alpha
Helix 95	AK5	D	598	614	Right-handed alpha
Helix 96	AK6	E	21	25	Right-handed 310
Helix 97	AK7	E	28	42	Right-handed alpha
Helix 98	AK8	E	53	58	Right-handed alpha
Helix 99	AK9	E	66	79	Right-handed alpha
Helix 100	AL1	E	93	100	Right-handed alpha
Helix 101	AL2	E	101	104	Right-handed 310
Helix 102	AL3	E	125	144	Right-handed alpha
Helix 103	AL4	E	164	179	Right-handed alpha
Helix 104	AL5	E	181	189	Right-handed alpha
Helix 105	AL6	E	192	196	Right-handed 310
Helix 106	AL7	E	200	204	Right-handed 310
Helix 107	AL8	E	215	245	Right-handed alpha
Helix 108	AL9	E	262	267	Right-handed alpha
Helix 109	AM1	E	268	270	Right-handed 310
Helix 110	AM2	E	287	304	Right-handed alpha
Helix 111	AM3	E	332	344	Right-handed alpha
Helix 112	AM4	E	377	393	Right-handed alpha
Helix 113	AM5	E	394	397	Right-handed 310
Helix 114	AM6	E	410	420	Right-handed alpha
Helix 115	AM7	E	429	443	Right-handed alpha
Helix 116	AM8	E	474	485	Right-handed alpha
Helix 117	AM9	E	510	512	Right-handed 310
Helix 118	AN1	E	513	518	Right-handed alpha
Helix 119	AN2	E	598	614	Right-handed alpha
Helix 120	AN3	F	21	25	Right-handed 310
Helix 121	AN4	F	28	42	Right-handed alpha
Helix 122	AN5	F	53	58	Right-handed alpha
Helix 123	AN6	F	66	79	Right-handed alpha
Helix 124	AN7	F	93	100	Right-handed alpha
Helix 125	AN8	F	101	104	Right-handed 310
Helix 126	AN9	F	125	144	Right-handed alpha
Helix 127	AO1	F	164	180	Right-handed alpha
Helix 128	AO2	F	181	190	Right-handed alpha
Helix 129	AO3	F	192	196	Right-handed 310
Helix 130	AO4	F	200	204	Right-handed 310
Helix 131	AO5	F	215	245	Right-handed alpha
Helix 132	AO6	F	262	268	Right-handed alpha
Helix 133	AO7	F	287	304	Right-handed alpha
Helix 134	AO8	F	332	344	Right-handed alpha
Helix 135	AO9	F	377	392	Right-handed alpha
Helix 136	AP1	F	393	397	Right-handed 310
Helix 137	AP2	F	410	420	Right-handed alpha
Helix 138	AP3	F	429	443	Right-handed alpha
Helix 139	AP4	F	474	485	Right-handed alpha
Helix 140	AP5	F	510	512	Right-handed 310
Helix 141	AP6	F	513	518	Right-handed alpha
Helix 142	AP7	F	598	614	Right-handed alpha

There are 30 sheets in PDB entry 5E9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	149	153	parallel
Strand 3	A	82	86	parallel
Strand 4	A	46	49	parallel
Strand 5	A	15	19	parallel
Strand 6	A	346	351	parallel
Strand 7	A	310	314	parallel
Strand 8	A	274	276	parallel
Strand 9	A	253	255	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	405	408	parallel
Strand 3	A	462	465	parallel
Strand 4	A	488	492	parallel
Strand 5	A	588	593	parallel
Strand 6	A	578	585	anti-parallel
Strand 7	A	564	569	anti-parallel
Strand 8	A	532	537	anti-parallel
Strand 9	A	549	560	anti-parallel
Strand 10	A	519	526	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	448	451	first strand
Strand 2	A	405	408	parallel
Strand 3	A	462	465	parallel
Strand 4	A	488	492	parallel
Strand 5	A	588	593	parallel
Strand 6	A	578	585	anti-parallel
Strand 7	A	564	569	anti-parallel
Strand 8	A	532	537	anti-parallel
Strand 9	A	549	560	anti-parallel
Strand 10	A	595	597	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	627	633	first strand
Strand 2	A	637	644	anti-parallel
Strand 3	A	678	684	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	650	653	first strand
Strand 2	A	670	673	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	250	251	first strand
Strand 2	B	149	153	parallel
Strand 3	B	82	86	parallel
Strand 4	B	46	49	parallel
Strand 5	B	15	19	parallel
Strand 6	B	346	351	parallel
Strand 7	B	310	314	parallel
Strand 8	B	274	276	parallel
Strand 9	B	253	255	parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	405	408	parallel
Strand 3	B	462	465	parallel
Strand 4	B	488	492	parallel
Strand 5	B	588	593	parallel
Strand 6	B	578	585	anti-parallel
Strand 7	B	564	569	anti-parallel
Strand 8	B	532	537	anti-parallel
Strand 9	B	549	560	anti-parallel
Strand 10	B	519	526	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	451	first strand
Strand 2	B	405	408	parallel
Strand 3	B	462	465	parallel
Strand 4	B	488	492	parallel
Strand 5	B	588	593	parallel
Strand 6	B	578	585	anti-parallel
Strand 7	B	564	569	anti-parallel
Strand 8	B	532	537	anti-parallel
Strand 9	B	549	560	anti-parallel
Strand 10	B	595	597	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	633	first strand
Strand 2	B	637	644	anti-parallel
Strand 3	B	678	684	anti-parallel
Strand 4	B	659	660	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	650	653	first strand
Strand 2	B	670	673	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	250	251	first strand
Strand 2	C	149	153	parallel
Strand 3	C	82	86	parallel
Strand 4	C	46	49	parallel
Strand 5	C	15	19	parallel
Strand 6	C	346	351	parallel
Strand 7	C	310	314	parallel
Strand 8	C	274	276	parallel
Strand 9	C	253	254	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	451	first strand
Strand 2	C	405	408	parallel
Strand 3	C	462	465	parallel
Strand 4	C	488	492	parallel
Strand 5	C	588	593	parallel
Strand 6	C	578	585	anti-parallel
Strand 7	C	564	569	anti-parallel
Strand 8	C	532	537	anti-parallel
Strand 9	C	549	560	anti-parallel
Strand 10	C	519	526	anti-parallel

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There are 10 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	448	451	first strand
Strand 2	C	405	408	parallel
Strand 3	C	462	465	parallel
Strand 4	C	488	492	parallel
Strand 5	C	588	593	parallel
Strand 6	C	578	585	anti-parallel
Strand 7	C	564	569	anti-parallel
Strand 8	C	532	537	anti-parallel
Strand 9	C	549	560	anti-parallel
Strand 10	C	595	597	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	627	633	first strand
Strand 2	C	637	644	anti-parallel
Strand 3	C	678	684	anti-parallel
Strand 4	C	659	660	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	650	653	first strand
Strand 2	C	670	673	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	250	251	first strand
Strand 2	D	149	153	parallel
Strand 3	D	82	86	parallel
Strand 4	D	46	49	parallel
Strand 5	D	15	20	parallel
Strand 6	D	346	351	parallel
Strand 7	D	310	314	parallel
Strand 8	D	274	276	parallel
Strand 9	D	253	254	parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	451	first strand
Strand 2	D	405	408	parallel
Strand 3	D	462	465	parallel
Strand 4	D	488	492	parallel
Strand 5	D	588	593	parallel
Strand 6	D	578	585	anti-parallel
Strand 7	D	564	569	anti-parallel
Strand 8	D	532	537	anti-parallel
Strand 9	D	549	560	anti-parallel
Strand 10	D	519	526	anti-parallel

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There are 10 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	448	451	first strand
Strand 2	D	405	408	parallel
Strand 3	D	462	465	parallel
Strand 4	D	488	492	parallel
Strand 5	D	588	593	parallel
Strand 6	D	578	585	anti-parallel
Strand 7	D	564	569	anti-parallel
Strand 8	D	532	537	anti-parallel
Strand 9	D	549	560	anti-parallel
Strand 10	D	595	597	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	627	633	first strand
Strand 2	D	637	644	anti-parallel
Strand 3	D	678	684	anti-parallel
Strand 4	D	659	660	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	650	653	first strand
Strand 2	D	670	673	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	250	251	first strand
Strand 2	E	149	153	parallel
Strand 3	E	82	86	parallel
Strand 4	E	46	49	parallel
Strand 5	E	15	19	parallel
Strand 6	E	346	351	parallel
Strand 7	E	310	314	parallel
Strand 8	E	274	276	parallel
Strand 9	E	253	255	parallel

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There are 10 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	451	first strand
Strand 2	E	405	408	parallel
Strand 3	E	462	465	parallel
Strand 4	E	488	492	parallel
Strand 5	E	588	593	parallel
Strand 6	E	578	585	anti-parallel
Strand 7	E	564	569	anti-parallel
Strand 8	E	533	537	anti-parallel
Strand 9	E	549	560	anti-parallel
Strand 10	E	519	526	anti-parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	451	first strand
Strand 2	E	405	408	parallel
Strand 3	E	462	465	parallel
Strand 4	E	488	492	parallel
Strand 5	E	588	593	parallel
Strand 6	E	578	585	anti-parallel
Strand 7	E	564	569	anti-parallel
Strand 8	E	533	537	anti-parallel
Strand 9	E	549	560	anti-parallel
Strand 10	E	595	597	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	627	633	first strand
Strand 2	E	637	644	anti-parallel
Strand 3	E	678	684	anti-parallel
Strand 4	E	659	660	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	650	653	first strand
Strand 2	E	670	673	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	251	first strand
Strand 2	F	149	153	parallel
Strand 3	F	82	86	parallel
Strand 4	F	46	49	parallel
Strand 5	F	15	20	parallel
Strand 6	F	346	351	parallel
Strand 7	F	310	314	parallel
Strand 8	F	274	276	parallel
Strand 9	F	253	254	parallel

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There are 10 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	451	first strand
Strand 2	F	405	408	parallel
Strand 3	F	462	465	parallel
Strand 4	F	488	492	parallel
Strand 5	F	588	593	parallel
Strand 6	F	578	585	anti-parallel
Strand 7	F	564	569	anti-parallel
Strand 8	F	533	537	anti-parallel
Strand 9	F	549	560	anti-parallel
Strand 10	F	519	526	anti-parallel

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There are 10 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	451	first strand
Strand 2	F	405	408	parallel
Strand 3	F	462	465	parallel
Strand 4	F	488	492	parallel
Strand 5	F	588	593	parallel
Strand 6	F	578	585	anti-parallel
Strand 7	F	564	569	anti-parallel
Strand 8	F	533	537	anti-parallel
Strand 9	F	549	560	anti-parallel
Strand 10	F	595	597	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	627	633	first strand
Strand 2	F	637	644	anti-parallel
Strand 3	F	678	684	anti-parallel
Strand 4	F	659	660	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	650	653	first strand
Strand 2	F	670	673	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9A

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9A