Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9D entry

There are 10 chains in PDB entry 5E9D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	GLU 275
B	GLN 2	MET 99
C	GLU 1	VAL 10
D	GLU 2	ASP 111
E	ALA 2	GLU 116
F	GLY 1	TRP 274
G	GLN 2	MET 99
H	GLU 1	VAL 10
I	GLU 2	THR 109
J	ALA 2	THR 115

There are 18 helices in PDB entry 5E9D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	85	Right-handed alpha
Helix 2	AA2	A	137	150	Right-handed alpha
Helix 3	AA3	A	151	161	Right-handed alpha
Helix 4	AA4	A	162	175	Right-handed alpha
Helix 5	AA5	A	175	180	Right-handed alpha
Helix 6	AA6	A	253	256	Right-handed 310
Helix 7	AA7	D	79	83	Right-handed 310
Helix 8	AA8	E	82	86	Right-handed 310
Helix 9	AA9	E	96	100	Right-handed 310
Helix 10	AB1	F	56	85	Right-handed alpha
Helix 11	AB2	F	137	150	Right-handed alpha
Helix 12	AB3	F	151	161	Right-handed alpha
Helix 13	AB4	F	162	175	Right-handed alpha
Helix 14	AB5	F	175	180	Right-handed alpha
Helix 15	AB6	F	253	255	Right-handed 310
Helix 16	AB7	I	79	83	Right-handed 310
Helix 17	AB8	J	82	86	Right-handed 310
Helix 18	AB9	J	96	100	Right-handed 310

There are 26 sheets in PDB entry 5E9D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	229	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	218	first strand
Strand 2	A	258	262	anti-parallel
Strand 3	A	270	273	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	18	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	60	65	anti-parallel
Strand 5	D	53	57	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	49	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	91	anti-parallel
Strand 4	D	99	100	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	76	78	anti-parallel
Strand 4	E	64	66	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	31	38	anti-parallel
Strand 5	E	42	51	anti-parallel
Strand 6	E	54	57	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	110	115	parallel
Strand 3	E	87	94	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	31	37	anti-parallel
Strand 3	F	21	28	anti-parallel
Strand 4	F	3	12	anti-parallel
Strand 5	F	94	103	anti-parallel
Strand 6	F	109	118	anti-parallel
Strand 7	F	121	126	anti-parallel
Strand 8	F	133	135	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	229	230	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	186	193	first strand
Strand 2	F	199	208	anti-parallel
Strand 3	F	241	249	anti-parallel
Strand 4	F	234	235	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	223	first strand
Strand 2	F	214	219	anti-parallel
Strand 3	F	257	262	anti-parallel
Strand 4	F	270	272	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	50	51	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	11	first strand
Strand 2	G	21	30	anti-parallel
Strand 3	G	62	70	anti-parallel
Strand 4	G	55	56	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	44	45	first strand
Strand 2	G	36	41	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	91	94	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	4	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	60	65	anti-parallel
Strand 5	I	53	57	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	104	109	parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	31	37	anti-parallel
Strand 5	I	44	49	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	104	109	parallel
Strand 3	I	84	91	anti-parallel
Strand 4	I	99	100	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	19	25	anti-parallel
Strand 3	J	76	78	anti-parallel
Strand 4	J	64	66	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	110	115	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	31	38	anti-parallel
Strand 5	J	42	51	anti-parallel
Strand 6	J	54	57	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	14	first strand
Strand 2	J	110	115	parallel
Strand 3	J	87	94	anti-parallel
Strand 4	J	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9D

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9D