Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E9E entry

There are 2 chains in PDB entry 5E9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 552GLY 810
B
 ILE 552LEU 813
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 5E9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
619 623Right-handed 310
Helix 2
AA2
A
631 636Right-handed alpha
Helix 3
AA3
A
656 679Right-handed alpha
Helix 4
AA4
A
735 748Right-handed alpha
Helix 5
AA5
A
782 794Right-handed alpha
Helix 6
AA6
A
797 803Right-handed alpha
Helix 7
AA7
B
619 623Right-handed 310
Helix 8
AA8
B
631 636Right-handed alpha
Helix 9
AA9
B
648 653Right-handed alpha
Helix 10
AB1
B
656 679Right-handed alpha
Helix 11
AB2
B
735 748Right-handed alpha
Helix 12
AB3
B
782 794Right-handed alpha
Helix 13
AB4
B
797 803Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5E9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
592 604anti-parallel
Strand 3
A
641 647anti-parallel
Strand 4
A
708 714anti-parallel
Strand 5
A
692 696anti-parallel
Strand 6
A
558 566anti-parallel
Strand 7
A
571 581anti-parallel
Strand 8
A
592 604anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 688first strand
Strand 2
A
763 764parallel
Strand 3
A
758 760anti-parallel
Strand 4
A
721 722anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 755first strand
Strand 2
A
768 770anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
B
592 604anti-parallel
Strand 3
B
641 647anti-parallel
Strand 4
B
708 714anti-parallel
Strand 5
B
692 696anti-parallel
Strand 6
B
558 566anti-parallel
Strand 7
B
571 581anti-parallel
Strand 8
B
592 604anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
687 688first strand
Strand 2
B
763 764parallel
Strand 3
B
758 760anti-parallel
Strand 4
B
721 722anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
753 755first strand
Strand 2
B
768 770anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il