Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9F entry

There are 4 chains in PDB entry 5E9F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	THR 528
B	LYS 4	THR 528
C	LYS 4	THR 528
D	MET 6	THR 528

There are103 helices in PDB entry 5E9F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	31	Right-handed alpha
Helix 2	AA2	A	32	37	Right-handed 310
Helix 3	AA3	A	44	50	Right-handed alpha
Helix 4	AA4	A	59	78	Right-handed alpha
Helix 5	AA5	A	89	97	Right-handed alpha
Helix 6	AA6	A	106	114	Right-handed alpha
Helix 7	AA7	A	130	157	Right-handed alpha
Helix 8	AA8	A	158	165	Right-handed 310
Helix 9	AA9	A	184	199	Right-handed alpha
Helix 10	AB1	A	225	241	Right-handed alpha
Helix 11	AB2	A	283	291	Right-handed alpha
Helix 12	AB3	A	305	313	Right-handed alpha
Helix 13	AB4	A	316	326	Right-handed alpha
Helix 14	AB5	A	333	346	Right-handed alpha
Helix 15	AB6	A	349	360	Right-handed alpha
Helix 16	AB7	A	384	396	Right-handed alpha
Helix 17	AB8	A	397	399	Right-handed 310
Helix 18	AB9	A	410	423	Right-handed alpha
Helix 19	AC1	A	445	459	Right-handed alpha
Helix 20	AC2	A	468	489	Right-handed alpha
Helix 21	AC3	A	489	497	Right-handed alpha
Helix 22	AC4	A	497	504	Right-handed alpha
Helix 23	AC5	A	506	509	Right-handed 310
Helix 24	AC6	A	510	515	Right-handed alpha
Helix 25	AC7	A	516	528	Right-handed alpha
Helix 26	AC8	B	15	31	Right-handed alpha
Helix 27	AC9	B	33	37	Right-handed 310
Helix 28	AD1	B	44	50	Right-handed alpha
Helix 29	AD2	B	59	78	Right-handed alpha
Helix 30	AD3	B	89	97	Right-handed alpha
Helix 31	AD4	B	106	114	Right-handed alpha
Helix 32	AD5	B	130	157	Right-handed alpha
Helix 33	AD6	B	158	165	Right-handed 310
Helix 34	AD7	B	184	198	Right-handed alpha
Helix 35	AD8	B	225	244	Right-handed alpha
Helix 36	AD9	B	266	273	Right-handed 310
Helix 37	AE1	B	283	290	Right-handed alpha
Helix 38	AE2	B	305	311	Right-handed alpha
Helix 39	AE3	B	316	326	Right-handed alpha
Helix 40	AE4	B	338	346	Right-handed alpha
Helix 41	AE5	B	350	359	Right-handed alpha
Helix 42	AE6	B	384	396	Right-handed alpha
Helix 43	AE7	B	397	399	Right-handed 310
Helix 44	AE8	B	410	425	Right-handed alpha
Helix 45	AE9	B	445	450	Right-handed alpha
Helix 46	AF1	B	451	459	Right-handed alpha
Helix 47	AF2	B	468	489	Right-handed alpha
Helix 48	AF3	B	489	497	Right-handed alpha
Helix 49	AF4	B	497	505	Right-handed alpha
Helix 50	AF5	B	506	509	Right-handed 310
Helix 51	AF6	B	510	516	Right-handed alpha
Helix 52	AF7	B	516	528	Right-handed alpha
Helix 53	AF8	C	15	32	Right-handed alpha
Helix 54	AF9	C	33	37	Right-handed 310
Helix 55	AG1	C	44	50	Right-handed alpha
Helix 56	AG2	C	59	78	Right-handed alpha
Helix 57	AG3	C	89	97	Right-handed alpha
Helix 58	AG4	C	106	114	Right-handed alpha
Helix 59	AG5	C	130	156	Right-handed alpha
Helix 60	AG6	C	158	165	Right-handed 310
Helix 61	AG7	C	184	199	Right-handed alpha
Helix 62	AG8	C	225	244	Right-handed alpha
Helix 63	AG9	C	254	256	Right-handed 310
Helix 64	AH1	C	266	270	Right-handed 310
Helix 65	AH2	C	283	292	Right-handed alpha
Helix 66	AH3	C	305	313	Right-handed alpha
Helix 67	AH4	C	317	326	Right-handed alpha
Helix 68	AH5	C	339	345	Right-handed alpha
Helix 69	AH6	C	350	360	Right-handed alpha
Helix 70	AH7	C	384	396	Right-handed alpha
Helix 71	AH8	C	397	399	Right-handed 310
Helix 72	AH9	C	410	425	Right-handed alpha
Helix 73	AI1	C	439	444	Right-handed alpha
Helix 74	AI2	C	445	458	Right-handed alpha
Helix 75	AI3	C	468	489	Right-handed alpha
Helix 76	AI4	C	489	497	Right-handed alpha
Helix 77	AI5	C	497	504	Right-handed alpha
Helix 78	AI6	C	506	509	Right-handed 310
Helix 79	AI7	C	510	516	Right-handed alpha
Helix 80	AI8	C	516	528	Right-handed alpha
Helix 81	AI9	D	12	32	Right-handed alpha
Helix 82	AJ1	D	33	37	Right-handed 310
Helix 83	AJ2	D	44	50	Right-handed alpha
Helix 84	AJ3	D	59	77	Right-handed alpha
Helix 85	AJ4	D	89	97	Right-handed alpha
Helix 86	AJ5	D	106	114	Right-handed alpha
Helix 87	AJ6	D	130	157	Right-handed alpha
Helix 88	AJ7	D	158	163	Right-handed alpha
Helix 89	AJ8	D	184	199	Right-handed alpha
Helix 90	AJ9	D	225	244	Right-handed alpha
Helix 91	AK1	D	254	256	Right-handed 310
Helix 92	AK2	D	266	273	Right-handed 310
Helix 93	AK3	D	349	358	Right-handed alpha
Helix 94	AK4	D	383	396	Right-handed alpha
Helix 95	AK5	D	397	399	Right-handed 310
Helix 96	AK6	D	410	423	Right-handed alpha
Helix 97	AK7	D	445	460	Right-handed alpha
Helix 98	AK8	D	468	489	Right-handed alpha
Helix 99	AK9	D	489	497	Right-handed alpha
Helix 100	AL1	D	497	504	Right-handed alpha
Helix 101	AL2	D	506	509	Right-handed 310
Helix 102	AL3	D	510	516	Right-handed alpha
Helix 103	AL4	D	516	528	Right-handed alpha

There are 13 sheets in PDB entry 5E9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	461	466	parallel
Strand 3	A	430	433	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	174	177	parallel
Strand 3	A	202	206	parallel
Strand 4	A	248	253	parallel
Strand 5	A	401	404	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	223	first strand
Strand 2	A	260	261	parallel
Strand 3	A	379	380	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	461	466	parallel
Strand 3	B	430	433	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	174	177	parallel
Strand 3	B	202	206	parallel
Strand 4	B	248	253	parallel
Strand 5	B	401	404	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	223	first strand
Strand 2	B	258	261	parallel
Strand 3	B	379	380	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	461	466	parallel
Strand 3	C	430	434	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	103	105	first strand
Strand 2	C	174	177	parallel
Strand 3	C	202	206	parallel
Strand 4	C	248	253	parallel
Strand 5	C	401	404	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	223	first strand
Strand 2	C	258	261	parallel
Strand 3	C	379	380	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	274	275	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	85	first strand
Strand 2	D	461	466	parallel
Strand 3	D	430	433	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	105	first strand
Strand 2	D	174	177	parallel
Strand 3	D	202	206	parallel
Strand 4	D	248	253	parallel
Strand 5	D	401	404	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	223	first strand
Strand 2	D	258	261	parallel
Strand 3	D	379	380	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9F

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9F