Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5E9H entry

There are 2 chains in PDB entry 5E9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 11GLY 528
B
 ASN 12LYS 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5E9H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
44 50Right-handed alpha
Helix 4
AA4
A
59 78Right-handed alpha
Helix 5
AA5
A
89 97Right-handed alpha
Helix 6
AA6
A
106 114Right-handed alpha
Helix 7
AA7
A
130 156Right-handed alpha
Helix 8
AA8
A
158 162Right-handed 310
Helix 9
AA9
A
184 199Right-handed alpha
Helix 10
AB1
A
225 244Right-handed alpha
Helix 11
AB2
A
266 271Right-handed alpha
Helix 12
AB3
A
283 294Right-handed alpha
Helix 13
AB4
A
297 312Right-handed alpha
Helix 14
AB5
A
316 328Right-handed alpha
Helix 15
AB6
A
332 345Right-handed alpha
Helix 16
AB7
A
348 361Right-handed alpha
Helix 17
AB8
A
383 395Right-handed alpha
Helix 18
AB9
A
396 398Right-handed 310
Helix 19
AC1
A
409 422Right-handed alpha
Helix 20
AC2
A
438 443Right-handed alpha
Helix 21
AC3
A
444 449Right-handed alpha
Helix 22
AC4
A
450 458Right-handed alpha
Helix 23
AC5
A
467 488Right-handed alpha
Helix 24
AC6
A
488 496Right-handed alpha
Helix 25
AC7
A
496 503Right-handed alpha
Helix 26
AC8
A
505 508Right-handed 310
Helix 27
AC9
A
509 514Right-handed alpha
Helix 28
AD1
A
515 526Right-handed alpha
Helix 29
AD2
B
13 32Right-handed alpha
Helix 30
AD3
B
33 37Right-handed 310
Helix 31
AD4
B
44 50Right-handed alpha
Helix 32
AD5
B
59 78Right-handed alpha
Helix 33
AD6
B
89 97Right-handed alpha
Helix 34
AD7
B
106 114Right-handed alpha
Helix 35
AD8
B
130 156Right-handed alpha
Helix 36
AD9
B
158 162Right-handed 310
Helix 37
AE1
B
184 199Right-handed alpha
Helix 38
AE2
B
225 243Right-handed alpha
Helix 39
AE3
B
266 273Right-handed 310
Helix 40
AE4
B
283 294Right-handed alpha
Helix 41
AE5
B
298 312Right-handed alpha
Helix 42
AE6
B
316 328Right-handed alpha
Helix 43
AE7
B
332 345Right-handed alpha
Helix 44
AE8
B
348 361Right-handed alpha
Helix 45
AE9
B
383 395Right-handed alpha
Helix 46
AF1
B
396 398Right-handed 310
Helix 47
AF2
B
409 422Right-handed alpha
Helix 48
AF3
B
444 458Right-handed alpha
Helix 49
AF4
B
467 488Right-handed alpha
Helix 50
AF5
B
489 496Right-handed alpha
Helix 51
AF6
B
496 503Right-handed alpha
Helix 52
AF7
B
505 508Right-handed 310
Helix 53
AF8
B
509 514Right-handed alpha
Helix 54
AF9
B
515 527Right-handed alpha
Helix 55
AG1
B
540 545Right-handed 310
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There are 5 sheets in PDB entry 5E9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 85first strand
Strand 2
A
460 465parallel
Strand 3
A
429 432parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
174 177parallel
Strand 3
A
202 206parallel
Strand 4
A
248 253parallel
Strand 5
A
400 403parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
260 261parallel
Strand 3
A
378 379anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 85first strand
Strand 2
B
460 465parallel
Strand 3
B
429 432parallel
Strand 4
B
400 403parallel
Strand 5
B
248 253parallel
Strand 6
B
202 206parallel
Strand 7
B
174 177parallel
Strand 8
B
103 105parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 223first strand
Strand 2
B
260 261parallel
Strand 3
B
378 379anti-parallel
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