Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9O entry

There are 4 chains in PDB entry 5E9O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 457	LYS 541
B	GLY 457	LYS 541
C	GLY 457	LYS 541
D	GLY 457	LYS 541

There are 4 helices in PDB entry 5E9O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	515	517	Right-handed 310
Helix 2	AA2	B	515	517	Right-handed 310
Helix 3	AA3	C	515	517	Right-handed 310
Helix 4	AA4	D	515	517	Right-handed 310

There are 8 sheets in PDB entry 5E9O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	472	478	parallel
Strand 3	A	525	531	anti-parallel
Strand 4	A	499	502	anti-parallel
Strand 5	A	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	A	537	540	anti-parallel
Strand 3	A	491	495	anti-parallel
Strand 4	A	512	513	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	472	478	parallel
Strand 3	B	525	531	anti-parallel
Strand 4	B	499	502	anti-parallel
Strand 5	B	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	469	first strand
Strand 2	B	537	540	anti-parallel
Strand 3	B	491	495	anti-parallel
Strand 4	B	512	513	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	461	first strand
Strand 2	C	472	478	parallel
Strand 3	C	525	531	anti-parallel
Strand 4	C	499	502	anti-parallel
Strand 5	C	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	466	469	first strand
Strand 2	C	537	540	anti-parallel
Strand 3	C	491	495	anti-parallel
Strand 4	C	512	513	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	460	461	first strand
Strand 2	D	472	478	parallel
Strand 3	D	525	531	anti-parallel
Strand 4	D	499	502	anti-parallel
Strand 5	D	505	506	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	466	469	first strand
Strand 2	D	537	540	anti-parallel
Strand 3	D	491	495	anti-parallel
Strand 4	D	512	513	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9O

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9O