Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9T entry

There are 3 chains in PDB entry 5E9T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ASP 503
B	MSE 1	GLY 447
C	SER 1	ASP 273

There are 69 helices in PDB entry 5E9T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	31	Right-handed alpha
Helix 2	AA2	A	47	56	Right-handed alpha
Helix 3	AA3	A	58	60	Right-handed 310
Helix 4	AA4	A	65	69	Right-handed alpha
Helix 5	AA5	A	80	87	Right-handed alpha
Helix 6	AA6	A	196	209	Right-handed alpha
Helix 7	AA7	A	224	233	Right-handed alpha
Helix 8	AA8	A	259	268	Right-handed alpha
Helix 9	AA9	A	269	272	Right-handed 310
Helix 10	AB1	A	279	294	Right-handed alpha
Helix 11	AB2	A	335	349	Right-handed alpha
Helix 12	AB3	A	363	373	Right-handed alpha
Helix 13	AB4	A	390	394	Right-handed 310
Helix 14	AB5	A	407	416	Right-handed alpha
Helix 15	AB6	A	427	433	Right-handed alpha
Helix 16	AB7	A	450	463	Right-handed alpha
Helix 17	AB8	A	473	482	Right-handed alpha
Helix 18	AB9	A	485	501	Right-handed alpha
Helix 19	AC1	B	9	22	Right-handed alpha
Helix 20	AC2	B	43	48	Right-handed alpha
Helix 21	AC3	B	60	64	Right-handed 310
Helix 22	AC4	B	175	187	Right-handed alpha
Helix 23	AC5	B	200	208	Right-handed alpha
Helix 24	AC6	B	229	238	Right-handed alpha
Helix 25	AC7	B	250	261	Right-handed alpha
Helix 26	AC8	B	263	267	Right-handed 310
Helix 27	AC9	B	299	307	Right-handed alpha
Helix 28	AD1	B	321	326	Right-handed alpha
Helix 29	AD2	B	327	330	Right-handed 310
Helix 30	AD3	B	340	351	Right-handed alpha
Helix 31	AD4	B	365	373	Right-handed alpha
Helix 32	AD5	B	404	410	Right-handed alpha
Helix 33	AD6	B	414	429	Right-handed alpha
Helix 34	AD7	B	433	443	Right-handed alpha
Helix 35	AD8	C	15	31	Right-handed alpha
Helix 36	AD9	C	47	55	Right-handed alpha
Helix 37	AE1	C	58	60	Right-handed 310
Helix 38	AE2	C	65	69	Right-handed alpha
Helix 39	AE3	C	80	88	Right-handed alpha
Helix 40	AE4	C	196	208	Right-handed alpha
Helix 41	AE5	C	224	232	Right-handed alpha
Helix 42	AE6	C	262	268	Right-handed alpha
Helix 43	AE7	C	269	272	Right-handed 310
Helix 44	AE8	C	279	293	Right-handed alpha
Helix 45	AE9	C	335	347	Right-handed alpha
Helix 46	AF1	C	362	373	Right-handed alpha
Helix 47	AF2	C	389	394	Right-handed 310
Helix 48	AF3	C	407	417	Right-handed alpha
Helix 49	AF4	C	427	432	Right-handed alpha
Helix 50	AF5	C	449	466	Right-handed alpha
Helix 51	AF6	C	468	476	Right-handed alpha
Helix 52	AF7	C	476	482	Right-handed alpha
Helix 53	AF8	C	485	503	Right-handed alpha
Helix 54	AF9	D	9	22	Right-handed alpha
Helix 55	AG1	D	43	48	Right-handed alpha
Helix 56	AG2	D	60	64	Right-handed 310
Helix 57	AG3	D	175	188	Right-handed alpha
Helix 58	AG4	D	202	207	Right-handed alpha
Helix 59	AG5	D	229	238	Right-handed alpha
Helix 60	AG6	D	250	253	Right-handed 310
Helix 61	AG7	D	254	260	Right-handed alpha
Helix 62	AG8	D	299	307	Right-handed alpha
Helix 63	AG9	D	321	326	Right-handed alpha
Helix 64	AH1	D	327	330	Right-handed 310
Helix 65	AH2	D	340	351	Right-handed alpha
Helix 66	AH3	D	365	373	Right-handed alpha
Helix 67	AH4	D	402	411	Right-handed alpha
Helix 68	AH5	D	415	429	Right-handed alpha
Helix 69	AH6	D	433	443	Right-handed alpha

There are 16 sheets in PDB entry 5E9T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	35	39	parallel
Strand 3	A	3	7	parallel
Strand 4	A	215	218	parallel
Strand 5	A	236	241	parallel
Strand 6	A	274	277	parallel
Strand 7	A	299	302	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	98	first strand
Strand 2	A	101	106	anti-parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	125	132	anti-parallel
Strand 5	A	135	142	anti-parallel
Strand 6	A	146	155	anti-parallel
Strand 7	A	158	167	anti-parallel
Strand 8	A	173	180	anti-parallel
Strand 9	A	183	188	anti-parallel
Strand 10	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	257	258	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	354	357	parallel
Strand 3	A	323	326	parallel
Strand 4	A	396	398	parallel
Strand 5	A	420	423	parallel
Strand 6	A	439	442	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	28	30	parallel
Strand 3	B	2	5	parallel
Strand 4	B	194	196	parallel
Strand 5	B	216	219	parallel
Strand 6	B	243	247	parallel
Strand 7	B	269	270	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	74	first strand
Strand 2	B	79	83	anti-parallel
Strand 3	B	86	94	anti-parallel
Strand 4	B	101	108	anti-parallel
Strand 5	B	114	120	anti-parallel
Strand 6	B	126	132	anti-parallel
Strand 7	B	138	144	anti-parallel
Strand 8	B	150	155	anti-parallel
Strand 9	B	161	163	anti-parallel
Strand 10	B	171	173	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	291	first strand
Strand 2	B	311	315	parallel
Strand 3	B	333	336	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	376	379	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	35	39	parallel
Strand 3	C	3	7	parallel
Strand 4	C	215	218	parallel
Strand 5	C	236	241	parallel
Strand 6	C	274	277	parallel
Strand 7	C	300	302	parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	98	first strand
Strand 2	C	101	105	anti-parallel
Strand 3	C	111	117	anti-parallel
Strand 4	C	125	132	anti-parallel
Strand 5	C	135	142	anti-parallel
Strand 6	C	146	155	anti-parallel
Strand 7	C	158	167	anti-parallel
Strand 8	C	173	180	anti-parallel
Strand 9	C	183	188	anti-parallel
Strand 10	C	193	194	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	247	first strand
Strand 2	C	257	258	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	356	357	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	399	first strand
Strand 2	C	420	423	parallel
Strand 3	C	439	442	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	28	30	parallel
Strand 3	D	2	5	parallel
Strand 4	D	194	196	parallel
Strand 5	D	216	219	parallel
Strand 6	D	243	248	parallel
Strand 7	D	269	271	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	79	83	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	102	108	anti-parallel
Strand 5	D	114	120	anti-parallel
Strand 6	D	126	133	anti-parallel
Strand 7	D	137	144	anti-parallel
Strand 8	D	150	155	anti-parallel
Strand 9	D	161	164	anti-parallel
Strand 10	D	170	173	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	337	first strand
Strand 2	D	312	316	parallel
Strand 3	D	288	291	parallel
Strand 4	D	353	356	parallel
Strand 5	D	376	379	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9T

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9T