Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5E9U entry

There are 8 chains in PDB entry 5E9U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ASP 503
B	MSE 1	LEU 445
C	SER 1	ASP 503
D	MSE 1	GLY 446
E	SER 1	ASP 503
F	MSE 1	LEU 445
G	SER 1	ASP 503
H	MSE 1	LEU 445

There are139 helices in PDB entry 5E9U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	30	Right-handed alpha
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	58	60	Right-handed 310
Helix 4	AA4	A	65	69	Right-handed alpha
Helix 5	AA5	A	80	86	Right-handed alpha
Helix 6	AA6	A	196	209	Right-handed alpha
Helix 7	AA7	A	224	233	Right-handed alpha
Helix 8	AA8	A	262	268	Right-handed alpha
Helix 9	AA9	A	269	272	Right-handed 310
Helix 10	AB1	A	279	294	Right-handed alpha
Helix 11	AB2	A	334	349	Right-handed alpha
Helix 12	AB3	A	362	373	Right-handed alpha
Helix 13	AB4	A	390	394	Right-handed 310
Helix 14	AB5	A	407	415	Right-handed alpha
Helix 15	AB6	A	427	433	Right-handed alpha
Helix 16	AB7	A	449	460	Right-handed alpha
Helix 17	AB8	A	461	466	Right-handed alpha
Helix 18	AB9	A	472	482	Right-handed alpha
Helix 19	AC1	A	485	502	Right-handed alpha
Helix 20	AC2	B	9	22	Right-handed alpha
Helix 21	AC3	B	43	48	Right-handed alpha
Helix 22	AC4	B	60	64	Right-handed 310
Helix 23	AC5	B	175	188	Right-handed alpha
Helix 24	AC6	B	200	210	Right-handed alpha
Helix 25	AC7	B	229	238	Right-handed alpha
Helix 26	AC8	B	250	259	Right-handed alpha
Helix 27	AC9	B	264	267	Right-handed 310
Helix 28	AD1	B	299	307	Right-handed alpha
Helix 29	AD2	B	321	328	Right-handed alpha
Helix 30	AD3	B	340	351	Right-handed alpha
Helix 31	AD4	B	365	373	Right-handed alpha
Helix 32	AD5	B	401	411	Right-handed alpha
Helix 33	AD6	B	416	429	Right-handed alpha
Helix 34	AD7	B	433	442	Right-handed alpha
Helix 35	AD8	C	15	31	Right-handed alpha
Helix 36	AD9	C	47	55	Right-handed alpha
Helix 37	AE1	C	58	60	Right-handed 310
Helix 38	AE2	C	66	68	Right-handed 310
Helix 39	AE3	C	81	86	Right-handed alpha
Helix 40	AE4	C	196	208	Right-handed alpha
Helix 41	AE5	C	224	233	Right-handed alpha
Helix 42	AE6	C	247	251	Right-handed 310
Helix 43	AE7	C	262	268	Right-handed alpha
Helix 44	AE8	C	269	272	Right-handed 310
Helix 45	AE9	C	279	294	Right-handed alpha
Helix 46	AF1	C	330	336	Right-handed 310
Helix 47	AF2	C	337	344	Right-handed alpha
Helix 48	AF3	C	363	373	Right-handed alpha
Helix 49	AF4	C	389	394	Right-handed 310
Helix 50	AF5	C	427	432	Right-handed alpha
Helix 51	AF6	C	449	466	Right-handed alpha
Helix 52	AF7	C	471	483	Right-handed alpha
Helix 53	AF8	C	485	502	Right-handed alpha
Helix 54	AF9	D	9	22	Right-handed alpha
Helix 55	AG1	D	43	48	Right-handed alpha
Helix 56	AG2	D	60	64	Right-handed 310
Helix 57	AG3	D	175	187	Right-handed alpha
Helix 58	AG4	D	200	209	Right-handed alpha
Helix 59	AG5	D	232	238	Right-handed alpha
Helix 60	AG6	D	250	258	Right-handed alpha
Helix 61	AG7	D	262	267	Right-handed 310
Helix 62	AG8	D	299	307	Right-handed alpha
Helix 63	AG9	D	321	326	Right-handed alpha
Helix 64	AH1	D	327	330	Right-handed 310
Helix 65	AH2	D	344	351	Right-handed alpha
Helix 66	AH3	D	365	373	Right-handed alpha
Helix 67	AH4	D	391	393	Right-handed 310
Helix 68	AH5	D	403	411	Right-handed alpha
Helix 69	AH6	D	414	429	Right-handed alpha
Helix 70	AH7	D	433	443	Right-handed alpha
Helix 71	AH8	E	15	32	Right-handed alpha
Helix 72	AH9	E	47	56	Right-handed alpha
Helix 73	AI1	E	58	60	Right-handed 310
Helix 74	AI2	E	65	69	Right-handed alpha
Helix 75	AI3	E	80	87	Right-handed alpha
Helix 76	AI4	E	107	109	Right-handed 310
Helix 77	AI5	E	196	209	Right-handed alpha
Helix 78	AI6	E	224	233	Right-handed alpha
Helix 79	AI7	E	262	268	Right-handed alpha
Helix 80	AI8	E	269	272	Right-handed 310
Helix 81	AI9	E	279	293	Right-handed alpha
Helix 82	AJ1	E	334	344	Right-handed alpha
Helix 83	AJ2	E	344	349	Right-handed alpha
Helix 84	AJ3	E	363	371	Right-handed alpha
Helix 85	AJ4	E	407	412	Right-handed alpha
Helix 86	AJ5	E	427	432	Right-handed alpha
Helix 87	AJ6	E	449	466	Right-handed alpha
Helix 88	AJ7	E	468	482	Right-handed alpha
Helix 89	AJ8	E	485	502	Right-handed alpha
Helix 90	AJ9	F	9	21	Right-handed alpha
Helix 91	AK1	F	43	48	Right-handed alpha
Helix 92	AK2	F	60	64	Right-handed 310
Helix 93	AK3	F	175	187	Right-handed alpha
Helix 94	AK4	F	200	209	Right-handed alpha
Helix 95	AK5	F	229	238	Right-handed alpha
Helix 96	AK6	F	250	258	Right-handed alpha
Helix 97	AK7	F	264	267	Right-handed 310
Helix 98	AK8	F	299	307	Right-handed alpha
Helix 99	AK9	F	321	326	Right-handed alpha
Helix 100	AL1	F	327	330	Right-handed 310
Helix 101	AL2	F	341	350	Right-handed alpha
Helix 102	AL3	F	365	372	Right-handed alpha
Helix 103	AL4	F	403	411	Right-handed alpha
Helix 104	AL5	F	414	429	Right-handed alpha
Helix 105	AL6	F	433	441	Right-handed alpha
Helix 106	AL7	G	16	30	Right-handed alpha
Helix 107	AL8	G	47	56	Right-handed alpha
Helix 108	AL9	G	65	69	Right-handed alpha
Helix 109	AM1	G	80	86	Right-handed alpha
Helix 110	AM2	G	196	208	Right-handed alpha
Helix 111	AM3	G	226	231	Right-handed alpha
Helix 112	AM4	G	262	269	Right-handed alpha
Helix 113	AM5	G	270	272	Right-handed 310
Helix 114	AM6	G	279	294	Right-handed alpha
Helix 115	AM7	G	330	336	Right-handed 310
Helix 116	AM8	G	337	344	Right-handed alpha
Helix 117	AM9	G	363	369	Right-handed alpha
Helix 118	AN1	G	389	393	Right-handed 310
Helix 119	AN2	G	412	417	Right-handed alpha
Helix 120	AN3	G	427	433	Right-handed alpha
Helix 121	AN4	G	450	466	Right-handed alpha
Helix 122	AN5	G	471	481	Right-handed alpha
Helix 123	AN6	G	485	501	Right-handed alpha
Helix 124	AN7	H	9	22	Right-handed alpha
Helix 125	AN8	H	43	48	Right-handed alpha
Helix 126	AN9	H	60	64	Right-handed 310
Helix 127	AO1	H	175	187	Right-handed alpha
Helix 128	AO2	H	200	207	Right-handed alpha
Helix 129	AO3	H	229	236	Right-handed alpha
Helix 130	AO4	H	250	260	Right-handed alpha
Helix 131	AO5	H	262	267	Right-handed 310
Helix 132	AO6	H	299	307	Right-handed alpha
Helix 133	AO7	H	321	326	Right-handed alpha
Helix 134	AO8	H	327	329	Right-handed 310
Helix 135	AO9	H	340	348	Right-handed alpha
Helix 136	AP1	H	365	373	Right-handed alpha
Helix 137	AP2	H	402	411	Right-handed alpha
Helix 138	AP3	H	414	429	Right-handed alpha
Helix 139	AP4	H	433	441	Right-handed alpha

There are 28 sheets in PDB entry 5E9U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	35	39	parallel
Strand 3	A	3	7	parallel
Strand 4	A	215	218	parallel
Strand 5	A	236	240	parallel
Strand 6	A	274	277	parallel
Strand 7	A	300	302	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	98	first strand
Strand 2	A	101	105	anti-parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	125	132	anti-parallel
Strand 5	A	135	142	anti-parallel
Strand 6	A	146	154	anti-parallel
Strand 7	A	159	167	anti-parallel
Strand 8	A	173	180	anti-parallel
Strand 9	A	183	188	anti-parallel
Strand 10	A	193	194	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	251	first strand
Strand 2	A	256	258	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	379	381	first strand
Strand 2	A	354	357	parallel
Strand 3	A	323	326	parallel
Strand 4	A	396	398	parallel
Strand 5	A	420	423	parallel
Strand 6	A	440	442	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	2	5	parallel
Strand 3	B	193	196	parallel
Strand 4	B	215	219	parallel
Strand 5	B	243	248	parallel
Strand 6	B	269	271	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	78	83	anti-parallel
Strand 3	B	86	93	anti-parallel
Strand 4	B	102	106	anti-parallel
Strand 5	B	117	119	anti-parallel
Strand 6	B	128	131	anti-parallel
Strand 7	B	140	144	anti-parallel
Strand 8	B	150	155	anti-parallel
Strand 9	B	161	164	anti-parallel
Strand 10	B	170	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	336	first strand
Strand 2	B	311	315	parallel
Strand 3	B	287	291	parallel
Strand 4	B	353	354	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	35	39	parallel
Strand 3	C	3	7	parallel
Strand 4	C	215	218	parallel
Strand 5	C	236	240	parallel
Strand 6	C	274	277	parallel
Strand 7	C	299	302	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	97	first strand
Strand 2	C	101	105	anti-parallel
Strand 3	C	111	117	anti-parallel
Strand 4	C	125	132	anti-parallel
Strand 5	C	135	142	anti-parallel
Strand 6	C	146	154	anti-parallel
Strand 7	C	159	167	anti-parallel
Strand 8	C	173	180	anti-parallel
Strand 9	C	183	188	anti-parallel
Strand 10	C	193	194	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	323	324	first strand
Strand 2	C	396	398	parallel
Strand 3	C	420	422	parallel
Strand 4	C	439	441	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	2	5	parallel
Strand 3	D	194	196	parallel
Strand 4	D	216	219	parallel
Strand 5	D	243	248	parallel
Strand 6	D	269	271	parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	74	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	102	108	anti-parallel
Strand 5	D	114	120	anti-parallel
Strand 6	D	126	133	anti-parallel
Strand 7	D	137	144	anti-parallel
Strand 8	D	150	155	anti-parallel
Strand 9	D	161	164	anti-parallel
Strand 10	D	170	172	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	337	first strand
Strand 2	D	311	316	parallel
Strand 3	D	287	291	parallel
Strand 4	D	353	356	parallel
Strand 5	D	376	380	parallel
Strand 6	D	395	396	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	36	39	parallel
Strand 3	E	3	7	parallel
Strand 4	E	215	218	parallel
Strand 5	E	236	240	parallel
Strand 6	E	274	277	parallel
Strand 7	E	300	302	parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	98	first strand
Strand 2	E	101	106	anti-parallel
Strand 3	E	111	117	anti-parallel
Strand 4	E	125	132	anti-parallel
Strand 5	E	135	142	anti-parallel
Strand 6	E	146	155	anti-parallel
Strand 7	E	158	167	anti-parallel
Strand 8	E	173	179	anti-parallel
Strand 9	E	184	188	anti-parallel
Strand 10	E	193	194	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	246	251	first strand
Strand 2	E	256	258	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	322	325	first strand
Strand 2	E	353	356	parallel
Strand 3	E	379	381	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	422	423	first strand
Strand 2	E	441	442	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	30	first strand
Strand 2	F	2	5	parallel
Strand 3	F	193	196	parallel
Strand 4	F	215	219	parallel
Strand 5	F	246	248	parallel
Strand 6	F	269	271	parallel

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There are 10 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	73	first strand
Strand 2	F	79	83	anti-parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	102	108	anti-parallel
Strand 5	F	114	120	anti-parallel
Strand 6	F	126	132	anti-parallel
Strand 7	F	138	144	anti-parallel
Strand 8	F	150	155	anti-parallel
Strand 9	F	161	163	anti-parallel
Strand 10	F	171	173	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	333	338	first strand
Strand 2	F	311	316	parallel
Strand 3	F	287	291	parallel
Strand 4	F	353	355	parallel
Strand 5	F	376	378	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	62	64	first strand
Strand 2	G	35	39	parallel
Strand 3	G	3	7	parallel
Strand 4	G	215	218	parallel
Strand 5	G	236	240	parallel
Strand 6	G	274	277	parallel
Strand 7	G	300	302	parallel

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There are 10 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	98	first strand
Strand 2	G	101	106	anti-parallel
Strand 3	G	111	117	anti-parallel
Strand 4	G	125	132	anti-parallel
Strand 5	G	135	142	anti-parallel
Strand 6	G	146	154	anti-parallel
Strand 7	G	159	167	anti-parallel
Strand 8	G	173	179	anti-parallel
Strand 9	G	184	188	anti-parallel
Strand 10	G	193	194	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	380	382	first strand
Strand 2	G	353	357	parallel
Strand 3	G	322	326	parallel
Strand 4	G	396	398	parallel
Strand 5	G	420	423	parallel
Strand 6	G	439	442	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	28	30	first strand
Strand 2	H	2	5	parallel
Strand 3	H	194	196	parallel
Strand 4	H	216	219	parallel
Strand 5	H	243	248	parallel
Strand 6	H	269	271	parallel

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There are 10 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	71	74	first strand
Strand 2	H	79	83	anti-parallel
Strand 3	H	86	93	anti-parallel
Strand 4	H	102	108	anti-parallel
Strand 5	H	114	120	anti-parallel
Strand 6	H	126	131	anti-parallel
Strand 7	H	140	144	anti-parallel
Strand 8	H	150	155	anti-parallel
Strand 9	H	161	163	anti-parallel
Strand 10	H	171	173	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	291	first strand
Strand 2	H	312	316	parallel
Strand 3	H	336	337	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	353	356	first strand
Strand 2	H	376	379	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5E9U

Analysis of interatomic Contacts of Structural Units in PDB entry:
5E9U