Analysis of interatomic Contacts of Structural Units in PDB entry:
5EAF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EAF entry

There are 2 chains in PDB entry 5EAF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8HIS 535
B
 ILE 7HIS 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5EAF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
26 50Right-handed alpha
Helix 3
AA3
A
68 75Right-handed alpha
Helix 4
AA4
A
75 88Right-handed alpha
Helix 5
AA5
A
105 114Right-handed alpha
Helix 6
AA6
A
122 135Right-handed alpha
Helix 7
AA7
A
143 155Right-handed alpha
Helix 8
AA8
A
156 158Right-handed 310
Helix 9
AA9
A
159 181Right-handed alpha
Helix 10
AB1
A
196 213Right-handed alpha
Helix 11
AB2
A
213 220Right-handed alpha
Helix 12
AB3
A
221 224Right-handed 310
Helix 13
AB4
A
225 235Right-handed alpha
Helix 14
AB5
A
236 242Right-handed 310
Helix 15
AB6
A
248 275Right-handed alpha
Helix 16
AB7
A
282 290Right-handed alpha
Helix 17
AB8
A
300 331Right-handed alpha
Helix 18
AB9
A
333 348Right-handed alpha
Helix 19
AC1
A
349 352Right-handed 310
Helix 20
AC2
A
356 362Right-handed alpha
Helix 21
AC3
A
363 377Right-handed alpha
Helix 22
AC4
A
409 414Right-handed alpha
Helix 23
AC5
A
427 432Right-handed 310
Helix 24
AC6
A
472 490Right-handed alpha
Helix 25
AC7
B
11 24Right-handed alpha
Helix 26
AC8
B
26 50Right-handed alpha
Helix 27
AC9
B
68 75Right-handed alpha
Helix 28
AD1
B
75 88Right-handed alpha
Helix 29
AD2
B
105 114Right-handed alpha
Helix 30
AD3
B
122 135Right-handed alpha
Helix 31
AD4
B
143 155Right-handed alpha
Helix 32
AD5
B
159 181Right-handed alpha
Helix 33
AD6
B
196 213Right-handed alpha
Helix 34
AD7
B
213 220Right-handed alpha
Helix 35
AD8
B
221 224Right-handed 310
Helix 36
AD9
B
225 235Right-handed alpha
Helix 37
AE1
B
237 242Right-handed 310
Helix 38
AE2
B
248 274Right-handed alpha
Helix 39
AE3
B
282 290Right-handed alpha
Helix 40
AE4
B
300 331Right-handed alpha
Helix 41
AE5
B
333 348Right-handed alpha
Helix 42
AE6
B
349 352Right-handed 310
Helix 43
AE7
B
356 362Right-handed alpha
Helix 44
AE8
B
363 377Right-handed alpha
Helix 45
AE9
B
409 415Right-handed alpha
Helix 46
AF1
B
427 432Right-handed 310
Helix 47
AF2
B
472 490Right-handed alpha
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There are 10 sheets in PDB entry 5EAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 95first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
405 408parallel
Strand 4
A
383 387anti-parallel
Strand 5
A
120 121anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
518 523anti-parallel
Strand 3
A
491 494anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
399 400anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 446first strand
Strand 2
A
451 453anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 505first strand
Strand 2
A
512 513anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 95first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
405 408parallel
Strand 4
B
383 387anti-parallel
Strand 5
B
120 121anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
518 523anti-parallel
Strand 3
B
491 494anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
399 400anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 446first strand
Strand 2
B
451 453anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 505first strand
Strand 2
B
512 513anti-parallel
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