Analysis of interatomic Contacts of Structural Units in PDB entry:
5EAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EAK entry

There are 2 chains in PDB entry 5EAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 47GLY 362
B
 GLY 51TYR 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5EAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 89Right-handed 310
Helix 2
AA2
A
90 107Right-handed alpha
Helix 3
AA3
A
137 145Right-handed alpha
Helix 4
AA4
A
148 169Right-handed alpha
Helix 5
AA5
A
177 179Right-handed 310
Helix 6
AA6
A
212 216Right-handed 310
Helix 7
AA7
A
217 223Right-handed 310
Helix 8
AA8
A
228 246Right-handed alpha
Helix 9
AA9
A
254 265Right-handed alpha
Helix 10
AB1
A
274 285Right-handed alpha
Helix 11
AB2
A
288 292Right-handed 310
Helix 12
AB3
A
294 299Right-handed alpha
Helix 13
AB4
A
301 306Right-handed alpha
Helix 14
AB5
A
325 334Right-handed alpha
Helix 15
AB6
A
338 348Right-handed alpha
Helix 16
AB7
A
352 361Right-handed alpha
Helix 17
AB8
B
87 89Right-handed 310
Helix 18
AB9
B
90 107Right-handed alpha
Helix 19
AC1
B
137 145Right-handed alpha
Helix 20
AC2
B
148 169Right-handed alpha
Helix 21
AC3
B
177 179Right-handed 310
Helix 22
AC4
B
212 216Right-handed 310
Helix 23
AC5
B
217 223Right-handed 310
Helix 24
AC6
B
228 246Right-handed alpha
Helix 25
AC7
B
254 265Right-handed alpha
Helix 26
AC8
B
274 285Right-handed alpha
Helix 27
AC9
B
288 292Right-handed 310
Helix 28
AD1
B
294 299Right-handed alpha
Helix 29
AD2
B
301 306Right-handed alpha
Helix 30
AD3
B
325 334Right-handed alpha
Helix 31
AD4
B
338 348Right-handed alpha
Helix 32
AD5
B
352 361Right-handed alpha
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There are 4 sheets in PDB entry 5EAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 61first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
78 85anti-parallel
Strand 4
A
124 130anti-parallel
Strand 5
A
115 120anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
181 183anti-parallel
Strand 3
A
189 191anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 61first strand
Strand 2
B
65 72anti-parallel
Strand 3
B
78 85anti-parallel
Strand 4
B
124 129anti-parallel
Strand 5
B
115 120anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 136first strand
Strand 2
B
181 183anti-parallel
Strand 3
B
189 191anti-parallel
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