Analysis of interatomic Contacts of Structural Units in PDB entry:
5EAX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EAX entry

There are 4 chains in PDB entry 5EAX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 1056
E	T 1	T 17
B	MET 1	LEU 1056
H	T 1	T 17

There are105 helices in PDB entry 5EAX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	11	Right-handed alpha
Helix 2	AA2	A	21	35	Right-handed alpha
Helix 3	AA3	A	86	90	Right-handed 310
Helix 4	AA4	A	128	137	Right-handed alpha
Helix 5	AA5	A	137	147	Right-handed alpha
Helix 6	AA6	A	148	151	Right-handed 310
Helix 7	AA7	A	154	173	Right-handed alpha
Helix 8	AA8	A	176	188	Right-handed alpha
Helix 9	AA9	A	190	200	Right-handed alpha
Helix 10	AB1	A	203	213	Right-handed alpha
Helix 11	AB2	A	214	226	Right-handed alpha
Helix 12	AB3	A	230	234	Right-handed 310
Helix 13	AB4	A	308	324	Right-handed alpha
Helix 14	AB5	A	348	368	Right-handed alpha
Helix 15	AB6	A	390	395	Right-handed alpha
Helix 16	AB7	A	399	410	Right-handed alpha
Helix 17	AB8	A	420	432	Right-handed alpha
Helix 18	AB9	A	435	454	Right-handed alpha
Helix 19	AC1	A	455	461	Right-handed 310
Helix 20	AC2	A	462	467	Right-handed alpha
Helix 21	AC3	A	469	475	Right-handed alpha
Helix 22	AC4	A	525	529	Right-handed 310
Helix 23	AC5	A	569	571	Right-handed 310
Helix 24	AC6	A	572	584	Right-handed alpha
Helix 25	AC7	A	586	597	Right-handed alpha
Helix 26	AC8	A	608	612	Right-handed 310
Helix 27	AC9	A	613	615	Right-handed 310
Helix 28	AD1	A	616	626	Right-handed alpha
Helix 29	AD2	A	628	641	Right-handed alpha
Helix 30	AD3	A	654	669	Right-handed alpha
Helix 31	AD4	A	679	693	Right-handed alpha
Helix 32	AD5	A	710	713	Right-handed 310
Helix 33	AD6	A	714	723	Right-handed alpha
Helix 34	AD7	A	726	737	Right-handed alpha
Helix 35	AD8	A	743	747	Right-handed 310
Helix 36	AD9	A	750	755	Right-handed alpha
Helix 37	AE1	A	769	774	Right-handed alpha
Helix 38	AE2	A	775	778	Right-handed 310
Helix 39	AE3	A	798	803	Right-handed alpha
Helix 40	AE4	A	809	814	Right-handed alpha
Helix 41	AE5	A	815	819	Right-handed 310
Helix 42	AE6	A	831	842	Right-handed alpha
Helix 43	AE7	A	851	857	Right-handed alpha
Helix 44	AE8	A	864	872	Right-handed alpha
Helix 45	AE9	A	879	888	Right-handed alpha
Helix 46	AF1	A	914	931	Right-handed alpha
Helix 47	AF2	A	934	936	Right-handed 310
Helix 48	AF3	A	944	958	Right-handed alpha
Helix 49	AF4	A	968	972	Right-handed 310
Helix 50	AF5	A	994	997	Right-handed 310
Helix 51	AF6	A	998	1006	Right-handed alpha
Helix 52	AF7	A	1018	1023	Right-handed alpha
Helix 53	AF8	A	1025	1038	Right-handed alpha
Helix 54	AF9	B	3	11	Right-handed alpha
Helix 55	AG1	B	21	35	Right-handed alpha
Helix 56	AG2	B	86	90	Right-handed 310
Helix 57	AG3	B	128	135	Right-handed alpha
Helix 58	AG4	B	137	147	Right-handed alpha
Helix 59	AG5	B	148	151	Right-handed 310
Helix 60	AG6	B	154	173	Right-handed alpha
Helix 61	AG7	B	176	188	Right-handed alpha
Helix 62	AG8	B	190	200	Right-handed alpha
Helix 63	AG9	B	203	213	Right-handed alpha
Helix 64	AH1	B	214	226	Right-handed alpha
Helix 65	AH2	B	230	234	Right-handed 310
Helix 66	AH3	B	308	324	Right-handed alpha
Helix 67	AH4	B	348	368	Right-handed alpha
Helix 68	AH5	B	390	395	Right-handed alpha
Helix 69	AH6	B	399	410	Right-handed alpha
Helix 70	AH7	B	420	432	Right-handed alpha
Helix 71	AH8	B	435	455	Right-handed alpha
Helix 72	AH9	B	456	461	Right-handed 310
Helix 73	AI1	B	462	467	Right-handed alpha
Helix 74	AI2	B	469	475	Right-handed alpha
Helix 75	AI3	B	525	529	Right-handed 310
Helix 76	AI4	B	569	571	Right-handed 310
Helix 77	AI5	B	572	584	Right-handed alpha
Helix 78	AI6	B	586	597	Right-handed alpha
Helix 79	AI7	B	608	612	Right-handed 310
Helix 80	AI8	B	613	615	Right-handed 310
Helix 81	AI9	B	616	626	Right-handed alpha
Helix 82	AJ1	B	628	641	Right-handed alpha
Helix 83	AJ2	B	654	669	Right-handed alpha
Helix 84	AJ3	B	679	693	Right-handed alpha
Helix 85	AJ4	B	707	713	Right-handed 310
Helix 86	AJ5	B	714	722	Right-handed alpha
Helix 87	AJ6	B	726	737	Right-handed alpha
Helix 88	AJ7	B	749	754	Right-handed 310
Helix 89	AJ8	B	769	774	Right-handed alpha
Helix 90	AJ9	B	775	778	Right-handed 310
Helix 91	AK1	B	798	804	Right-handed alpha
Helix 92	AK2	B	809	814	Right-handed alpha
Helix 93	AK3	B	815	819	Right-handed 310
Helix 94	AK4	B	831	842	Right-handed alpha
Helix 95	AK5	B	851	857	Right-handed alpha
Helix 96	AK6	B	864	872	Right-handed alpha
Helix 97	AK7	B	879	888	Right-handed alpha
Helix 98	AK8	B	914	931	Right-handed alpha
Helix 99	AK9	B	934	936	Right-handed 310
Helix 100	AL1	B	944	958	Right-handed alpha
Helix 101	AL2	B	968	972	Right-handed 310
Helix 102	AL3	B	994	997	Right-handed 310
Helix 103	AL4	B	998	1006	Right-handed alpha
Helix 104	AL5	B	1018	1023	Right-handed alpha
Helix 105	AL6	B	1025	1038	Right-handed alpha

There are 18 sheets in PDB entry 5EAX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	111	first strand
Strand 2	A	79	84	parallel
Strand 3	A	62	70	anti-parallel
Strand 4	A	48	58	anti-parallel
Strand 5	A	97	100	anti-parallel
Strand 6	A	118	120	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	273	287	parallel
Strand 3	A	252	268	anti-parallel
Strand 4	A	236	237	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	273	287	parallel
Strand 3	A	290	299	anti-parallel
Strand 4	A	331	334	parallel
Strand 5	A	343	346	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	496	503	anti-parallel
Strand 3	A	490	493	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	483	484	first strand
Strand 2	A	496	503	anti-parallel
Strand 3	A	543	548	anti-parallel
Strand 4	A	532	539	anti-parallel
Strand 5	A	518	521	anti-parallel
Strand 6	A	563	564	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	739	741	parallel
Strand 3	A	673	676	parallel
Strand 4	A	757	762	parallel
Strand 5	A	780	787	parallel
Strand 6	A	644	649	parallel
Strand 7	A	821	824	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	826	827	first strand
Strand 2	A	848	849	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	964	966	first strand
Strand 2	A	938	941	parallel
Strand 3	A	976	982	parallel
Strand 4	A	1009	1017	parallel
Strand 5	A	893	897	parallel
Strand 6	A	1041	1043	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	908	first strand
Strand 2	A	911	913	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	111	first strand
Strand 2	B	79	84	parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	48	58	anti-parallel
Strand 5	B	97	100	anti-parallel
Strand 6	B	118	120	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	273	287	parallel
Strand 3	B	252	268	anti-parallel
Strand 4	B	236	237	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	273	287	parallel
Strand 3	B	290	299	anti-parallel
Strand 4	B	331	334	parallel
Strand 5	B	343	346	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	496	503	anti-parallel
Strand 3	B	490	493	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	B	496	503	anti-parallel
Strand 3	B	543	548	anti-parallel
Strand 4	B	532	539	anti-parallel
Strand 5	B	518	521	anti-parallel
Strand 6	B	563	564	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	739	743	parallel
Strand 3	B	673	677	parallel
Strand 4	B	757	763	parallel
Strand 5	B	780	787	parallel
Strand 6	B	644	649	parallel
Strand 7	B	821	824	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	826	827	first strand
Strand 2	B	848	849	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	964	966	first strand
Strand 2	B	938	941	parallel
Strand 3	B	976	982	parallel
Strand 4	B	1009	1017	parallel
Strand 5	B	893	897	parallel
Strand 6	B	1041	1043	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	906	908	first strand
Strand 2	B	911	913	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EAX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EAX