Analysis of interatomic Contacts of Structural Units in PDB entry:
5EB1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EB1 entry

There are 4 chains in PDB entry 5EB1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40ARG 186
B
 GLN 44ALA 167
C
 THR 39ARG 186
D
 GLN 44ALA 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5EB1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 57Right-handed alpha
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
105 110Right-handed alpha
Helix 4
AA4
A
119 131Right-handed alpha
Helix 5
AA5
A
166 172Right-handed alpha
Helix 6
AA6
A
178 185Right-handed 310
Helix 7
AA7
B
45 50Right-handed 310
Helix 8
AA8
B
58 62Right-handed 310
Helix 9
AA9
B
73 90Right-handed alpha
Helix 10
AB1
B
106 129Right-handed alpha
Helix 11
AB2
B
131 133Right-handed 310
Helix 12
AB3
B
151 159Right-handed alpha
Helix 13
AB4
C
40 57Right-handed alpha
Helix 14
AB5
C
79 84Right-handed alpha
Helix 15
AB6
C
105 110Right-handed alpha
Helix 16
AB7
C
119 131Right-handed alpha
Helix 17
AB8
C
166 172Right-handed alpha
Helix 18
AB9
C
178 185Right-handed 310
Helix 19
AC1
D
45 50Right-handed 310
Helix 20
AC2
D
58 62Right-handed 310
Helix 21
AC3
D
73 90Right-handed alpha
Helix 22
AC4
D
106 129Right-handed alpha
Helix 23
AC5
D
131 133Right-handed 310
Helix 24
AC6
D
151 159Right-handed alpha
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There are 4 sheets in PDB entry 5EB1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
175 176anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
68 73parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
Strand 6
A
151 154parallel
Strand 7
A
161 165anti-parallel
Strand 8
B
160 165anti-parallel
Strand 9
B
95 100anti-parallel
Strand 10
B
135 139parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 60first strand
Strand 2
C
175 176anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 87first strand
Strand 2
C
93 99anti-parallel
Strand 3
C
68 73parallel
Strand 4
C
112 115parallel
Strand 5
C
136 139parallel
Strand 6
C
151 154parallel
Strand 7
C
161 165anti-parallel
Strand 8
D
161 165anti-parallel
Strand 9
D
95 99anti-parallel
Strand 10
D
135 139parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il