Analysis of interatomic Contacts of Structural Units in PDB entry:
5EB4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EB4 entry

There are 2 chains in PDB entry 5EB4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2SER 519
B
 ALA 2SER 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5EB4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
19 21Right-handed 310
Helix 3
AA3
A
37 46Right-handed alpha
Helix 4
AA4
A
59 70Right-handed 310
Helix 5
AA5
A
71 78Right-handed alpha
Helix 6
AA6
A
104 109Right-handed 310
Helix 7
AA7
A
119 126Right-handed alpha
Helix 8
AA8
A
130 146Right-handed alpha
Helix 9
AA9
A
152 165Right-handed alpha
Helix 10
AB1
A
196 204Right-handed 310
Helix 11
AB2
A
258 270Right-handed alpha
Helix 12
AB3
A
274 281Right-handed alpha
Helix 13
AB4
A
393 412Right-handed alpha
Helix 14
AB5
A
416 420Right-handed 310
Helix 15
AB6
A
426 430Right-handed 310
Helix 16
AB7
A
443 455Right-handed alpha
Helix 17
AB8
A
487 491Right-handed 310
Helix 18
AB9
A
499 519Right-handed alpha
Helix 19
AC1
B
9 13Right-handed 310
Helix 20
AC2
B
19 21Right-handed 310
Helix 21
AC3
B
37 46Right-handed alpha
Helix 22
AC4
B
59 70Right-handed 310
Helix 23
AC5
B
71 78Right-handed alpha
Helix 24
AC6
B
104 109Right-handed 310
Helix 25
AC7
B
119 126Right-handed alpha
Helix 26
AC8
B
130 146Right-handed alpha
Helix 27
AC9
B
152 165Right-handed alpha
Helix 28
AD1
B
196 204Right-handed 310
Helix 29
AD2
B
258 270Right-handed alpha
Helix 30
AD3
B
274 281Right-handed alpha
Helix 31
AD4
B
393 412Right-handed alpha
Helix 32
AD5
B
416 420Right-handed 310
Helix 33
AD6
B
426 430Right-handed 310
Helix 34
AD7
B
445 454Right-handed alpha
Helix 35
AD8
B
487 491Right-handed 310
Helix 36
AD9
B
499 518Right-handed alpha
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There are 15 sheets in PDB entry 5EB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
209 213parallel
Strand 3
A
51 54parallel
Strand 4
A
24 32parallel
Strand 5
A
243 256parallel
Strand 6
A
231 237anti-parallel
Strand 7
A
216 222anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
209 213parallel
Strand 3
A
51 54parallel
Strand 4
A
24 32parallel
Strand 5
A
243 256parallel
Strand 6
A
483 485parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
96 100anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
185 186anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
180 183parallel
Strand 3
A
319 323anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
356 362anti-parallel
Strand 6
A
300 307anti-parallel
Strand 7
A
431 433anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
180 183parallel
Strand 3
A
319 323anti-parallel
Strand 4
A
326 333anti-parallel
Strand 5
A
356 362anti-parallel
Strand 6
A
300 307anti-parallel
Strand 7
A
456 457anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
287 288parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
294 297anti-parallel
Strand 4
A
462 463anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
209 213parallel
Strand 3
B
51 54parallel
Strand 4
B
24 32parallel
Strand 5
B
243 256parallel
Strand 6
B
231 237anti-parallel
Strand 7
B
216 222anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 17first strand
Strand 2
B
209 213parallel
Strand 3
B
51 54parallel
Strand 4
B
24 32parallel
Strand 5
B
243 256parallel
Strand 6
B
483 485parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
96 100anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 114first strand
Strand 2
B
185 186anti-parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 173first strand
Strand 2
B
180 183parallel
Strand 3
B
319 322anti-parallel
Strand 4
B
327 333anti-parallel
Strand 5
B
356 362anti-parallel
Strand 6
B
300 306anti-parallel
Strand 7
B
456 457anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
287 288parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
370 373anti-parallel
Strand 3
B
294 297anti-parallel
Strand 4
B
462 463anti-parallel
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