Analysis of interatomic Contacts of Structural Units in PDB entry:
5EB5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EB5 entry

There are 2 chains in PDB entry 5EB5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 519
B	ALA 2	SER 519

There are 35 helices in PDB entry 5EB5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	13	Right-handed 310
Helix 2	AA2	A	19	21	Right-handed 310
Helix 3	AA3	A	37	46	Right-handed alpha
Helix 4	AA4	A	59	67	Right-handed 310
Helix 5	AA5	A	71	78	Right-handed alpha
Helix 6	AA6	A	104	109	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	130	146	Right-handed alpha
Helix 9	AA9	A	152	166	Right-handed alpha
Helix 10	AB1	A	196	204	Right-handed 310
Helix 11	AB2	A	258	270	Right-handed alpha
Helix 12	AB3	A	274	280	Right-handed alpha
Helix 13	AB4	A	393	412	Right-handed alpha
Helix 14	AB5	A	416	420	Right-handed 310
Helix 15	AB6	A	426	430	Right-handed 310
Helix 16	AB7	A	445	454	Right-handed alpha
Helix 17	AB8	A	487	491	Right-handed 310
Helix 18	AB9	A	499	519	Right-handed alpha
Helix 19	AC1	B	9	13	Right-handed 310
Helix 20	AC2	B	37	46	Right-handed alpha
Helix 21	AC3	B	59	68	Right-handed 310
Helix 22	AC4	B	71	78	Right-handed alpha
Helix 23	AC5	B	104	109	Right-handed 310
Helix 24	AC6	B	120	126	Right-handed alpha
Helix 25	AC7	B	130	146	Right-handed alpha
Helix 26	AC8	B	152	166	Right-handed alpha
Helix 27	AC9	B	196	204	Right-handed 310
Helix 28	AD1	B	258	270	Right-handed alpha
Helix 29	AD2	B	274	281	Right-handed alpha
Helix 30	AD3	B	393	412	Right-handed alpha
Helix 31	AD4	B	416	420	Right-handed 310
Helix 32	AD5	B	426	430	Right-handed 310
Helix 33	AD6	B	445	454	Right-handed alpha
Helix 34	AD7	B	487	491	Right-handed 310
Helix 35	AD8	B	499	518	Right-handed alpha

There are 15 sheets in PDB entry 5EB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	209	213	parallel
Strand 3	A	51	54	parallel
Strand 4	A	24	32	parallel
Strand 5	A	243	256	parallel
Strand 6	A	231	237	anti-parallel
Strand 7	A	216	222	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	209	213	parallel
Strand 3	A	51	54	parallel
Strand 4	A	24	32	parallel
Strand 5	A	243	256	parallel
Strand 6	A	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	96	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	114	first strand
Strand 2	A	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	180	183	parallel
Strand 3	A	319	322	anti-parallel
Strand 4	A	327	333	anti-parallel
Strand 5	A	356	362	anti-parallel
Strand 6	A	300	306	anti-parallel
Strand 7	A	432	433	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	180	183	parallel
Strand 3	A	319	322	anti-parallel
Strand 4	A	327	333	anti-parallel
Strand 5	A	356	362	anti-parallel
Strand 6	A	300	306	anti-parallel
Strand 7	A	456	457	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	387	first strand
Strand 2	A	370	373	anti-parallel
Strand 3	A	294	297	anti-parallel
Strand 4	A	462	463	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	209	213	parallel
Strand 3	B	51	54	parallel
Strand 4	B	24	32	parallel
Strand 5	B	243	256	parallel
Strand 6	B	231	237	anti-parallel
Strand 7	B	216	222	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	209	213	parallel
Strand 3	B	51	54	parallel
Strand 4	B	24	32	parallel
Strand 5	B	243	256	parallel
Strand 6	B	483	485	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	96	100	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	114	first strand
Strand 2	B	185	186	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	180	183	parallel
Strand 3	B	319	322	anti-parallel
Strand 4	B	327	333	anti-parallel
Strand 5	B	356	362	anti-parallel
Strand 6	B	300	306	anti-parallel
Strand 7	B	456	457	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	273	first strand
Strand 2	B	287	288	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	387	first strand
Strand 2	B	370	373	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	462	463	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EB5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EB5