Analysis of interatomic Contacts of Structural Units in PDB entry:
5EBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EBB entry

There are 3 chains in PDB entry 5EBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34CYS 443
B
 PRO 34CYS 443
C
 PRO 34CYS 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 5EBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
62 66Right-handed 310
Helix 3
AA3
A
84 98Right-handed alpha
Helix 4
AA4
A
116 120Right-handed 310
Helix 5
AA5
A
121 140Right-handed alpha
Helix 6
AA6
A
165 176Right-handed alpha
Helix 7
AA7
A
180 191Right-handed alpha
Helix 8
AA8
A
209 214Right-handed 310
Helix 9
AA9
A
217 221Right-handed 310
Helix 10
AB1
A
225 227Right-handed 310
Helix 11
AB2
A
228 243Right-handed alpha
Helix 12
AB3
A
268 282Right-handed alpha
Helix 13
AB4
A
356 364Right-handed alpha
Helix 14
AB5
A
374 379Right-handed alpha
Helix 15
AB6
A
384 396Right-handed alpha
Helix 16
AB7
A
400 411Right-handed alpha
Helix 17
AB8
A
421 434Right-handed alpha
Helix 18
AB9
A
436 443Right-handed alpha
Helix 19
AC1
B
62 66Right-handed 310
Helix 20
AC2
B
84 98Right-handed alpha
Helix 21
AC3
B
116 120Right-handed 310
Helix 22
AC4
B
121 140Right-handed alpha
Helix 23
AC5
B
165 176Right-handed alpha
Helix 24
AC6
B
180 191Right-handed alpha
Helix 25
AC7
B
209 214Right-handed 310
Helix 26
AC8
B
217 221Right-handed 310
Helix 27
AC9
B
225 227Right-handed 310
Helix 28
AD1
B
228 243Right-handed alpha
Helix 29
AD2
B
268 282Right-handed alpha
Helix 30
AD3
B
356 364Right-handed alpha
Helix 31
AD4
B
374 378Right-handed alpha
Helix 32
AD5
B
384 396Right-handed alpha
Helix 33
AD6
B
400 411Right-handed alpha
Helix 34
AD7
B
421 434Right-handed alpha
Helix 35
AD8
B
436 443Right-handed alpha
Helix 36
AD9
C
57 61Right-handed 310
Helix 37
AE1
C
62 66Right-handed 310
Helix 38
AE2
C
84 97Right-handed alpha
Helix 39
AE3
C
116 120Right-handed 310
Helix 40
AE4
C
121 140Right-handed alpha
Helix 41
AE5
C
165 176Right-handed alpha
Helix 42
AE6
C
180 191Right-handed alpha
Helix 43
AE7
C
209 214Right-handed 310
Helix 44
AE8
C
217 221Right-handed 310
Helix 45
AE9
C
225 227Right-handed 310
Helix 46
AF1
C
228 243Right-handed alpha
Helix 47
AF2
C
268 282Right-handed alpha
Helix 48
AF3
C
356 364Right-handed alpha
Helix 49
AF4
C
374 379Right-handed alpha
Helix 50
AF5
C
384 396Right-handed alpha
Helix 51
AF6
C
400 411Right-handed alpha
Helix 52
AF7
C
421 434Right-handed alpha
Helix 53
AF8
C
436 443Right-handed alpha
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There are 6 sheets in PDB entry 5EBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
104 107parallel
Strand 3
A
38 43parallel
Strand 4
A
334 340anti-parallel
Strand 5
A
347 355anti-parallel
Strand 6
A
368 373anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 197first strand
Strand 2
A
200 207anti-parallel
Strand 3
A
246 250parallel
Strand 4
A
286 291parallel
Strand 5
A
309 315parallel
Strand 6
A
298 303anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
104 107parallel
Strand 3
B
38 43parallel
Strand 4
B
334 340anti-parallel
Strand 5
B
347 355anti-parallel
Strand 6
B
368 373anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 197first strand
Strand 2
B
200 207anti-parallel
Strand 3
B
246 250parallel
Strand 4
B
286 291parallel
Strand 5
B
309 315parallel
Strand 6
B
298 303anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
145 147first strand
Strand 2
C
104 107parallel
Strand 3
C
38 43parallel
Strand 4
C
334 340anti-parallel
Strand 5
C
347 355anti-parallel
Strand 6
C
368 373anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 197first strand
Strand 2
C
200 208anti-parallel
Strand 3
C
246 251parallel
Strand 4
C
286 291parallel
Strand 5
C
309 315parallel
Strand 6
C
298 303anti-parallel
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