Analysis of interatomic Contacts of Structural Units in PDB entry:
5EBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EBD entry

There is 1 chain in PDB entry 5EBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5EBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
44 50Right-handed alpha
Helix 3
AA3
A
139 144Right-handed alpha
Helix 4
AA4
A
158 165Right-handed alpha
Helix 5
AA5
A
219 230Right-handed alpha
Helix 6
AA6
A
241 245Right-handed 310
Helix 7
AA7
A
299 304Right-handed 310
Helix 8
AA8
A
351 359Right-handed alpha
Helix 9
AA9
A
367 372Right-handed alpha
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There are 6 sheets in PDB entry 5EBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
13 17anti-parallel
Strand 3
A
4 7anti-parallel
Strand 4
A
41 43parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 109first strand
Strand 2
A
287 293anti-parallel
Strand 3
A
272 279anti-parallel
Strand 4
A
74 83anti-parallel
Strand 5
A
91 98anti-parallel
Strand 6
A
315 318parallel
Strand 7
A
306 308anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
114 120parallel
Strand 3
A
123 127anti-parallel
Strand 4
A
132 134anti-parallel
Strand 5
A
167 170parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
114 120parallel
Strand 3
A
263 264parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 201first strand
Strand 2
A
204 211anti-parallel
Strand 3
A
214 218anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
337 340anti-parallel
Strand 3
A
322 325anti-parallel
Strand 4
A
364 365parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il