Analysis of interatomic Contacts of Structural Units in PDB entry:
5EBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EBU entry

There are 8 chains in PDB entry 5EBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 8	TYR 374
B	TYR 8	TYR 374
C	TYR 8	TYR 374
D	ILE 6	TYR 374
E	TYR 8	TYR 374
F	TYR 8	TYR 374
G	TYR 8	TYR 374
H	TYR 8	TYR 374

There are137 helices in PDB entry 5EBU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	31	Right-handed alpha
Helix 2	AA2	A	34	43	Right-handed alpha
Helix 3	AA3	A	48	57	Right-handed alpha
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	103	116	Right-handed alpha
Helix 6	AA6	A	128	137	Right-handed alpha
Helix 7	AA7	A	150	165	Right-handed alpha
Helix 8	AA8	A	181	188	Right-handed alpha
Helix 9	AA9	A	198	202	Right-handed 310
Helix 10	AB1	A	210	218	Right-handed alpha
Helix 11	AB2	A	223	235	Right-handed alpha
Helix 12	AB3	A	245	255	Right-handed alpha
Helix 13	AB4	A	264	268	Right-handed 310
Helix 14	AB5	A	275	278	Right-handed 310
Helix 15	AB6	A	279	288	Right-handed alpha
Helix 16	AB7	A	301	311	Right-handed alpha
Helix 17	AB8	A	319	353	Right-handed alpha
Helix 18	AB9	A	356	361	Right-handed alpha
Helix 19	AC1	B	23	33	Right-handed alpha
Helix 20	AC2	B	34	43	Right-handed alpha
Helix 21	AC3	B	48	57	Right-handed alpha
Helix 22	AC4	B	96	100	Right-handed 310
Helix 23	AC5	B	103	116	Right-handed alpha
Helix 24	AC6	B	128	137	Right-handed alpha
Helix 25	AC7	B	150	164	Right-handed alpha
Helix 26	AC8	B	181	187	Right-handed alpha
Helix 27	AC9	B	198	202	Right-handed 310
Helix 28	AD1	B	210	218	Right-handed alpha
Helix 29	AD2	B	223	235	Right-handed alpha
Helix 30	AD3	B	245	255	Right-handed alpha
Helix 31	AD4	B	275	278	Right-handed 310
Helix 32	AD5	B	279	288	Right-handed alpha
Helix 33	AD6	B	301	312	Right-handed alpha
Helix 34	AD7	B	319	353	Right-handed alpha
Helix 35	AD8	B	356	361	Right-handed alpha
Helix 36	AD9	C	23	30	Right-handed alpha
Helix 37	AE1	C	34	43	Right-handed alpha
Helix 38	AE2	C	48	57	Right-handed alpha
Helix 39	AE3	C	96	100	Right-handed 310
Helix 40	AE4	C	103	116	Right-handed alpha
Helix 41	AE5	C	128	137	Right-handed alpha
Helix 42	AE6	C	150	164	Right-handed alpha
Helix 43	AE7	C	181	187	Right-handed alpha
Helix 44	AE8	C	198	203	Right-handed alpha
Helix 45	AE9	C	210	218	Right-handed alpha
Helix 46	AF1	C	223	235	Right-handed alpha
Helix 47	AF2	C	246	255	Right-handed alpha
Helix 48	AF3	C	275	288	Right-handed alpha
Helix 49	AF4	C	301	311	Right-handed alpha
Helix 50	AF5	C	319	353	Right-handed alpha
Helix 51	AF6	C	356	362	Right-handed alpha
Helix 52	AF7	D	24	31	Right-handed alpha
Helix 53	AF8	D	34	43	Right-handed alpha
Helix 54	AF9	D	48	57	Right-handed alpha
Helix 55	AG1	D	96	100	Right-handed 310
Helix 56	AG2	D	103	116	Right-handed alpha
Helix 57	AG3	D	128	137	Right-handed alpha
Helix 58	AG4	D	150	165	Right-handed alpha
Helix 59	AG5	D	181	187	Right-handed alpha
Helix 60	AG6	D	224	235	Right-handed alpha
Helix 61	AG7	D	245	255	Right-handed alpha
Helix 62	AG8	D	264	268	Right-handed 310
Helix 63	AG9	D	275	288	Right-handed alpha
Helix 64	AH1	D	301	311	Right-handed alpha
Helix 65	AH2	D	319	353	Right-handed alpha
Helix 66	AH3	D	356	361	Right-handed alpha
Helix 67	AH4	E	21	23	Right-handed 310
Helix 68	AH5	E	24	31	Right-handed alpha
Helix 69	AH6	E	34	43	Right-handed alpha
Helix 70	AH7	E	48	57	Right-handed alpha
Helix 71	AH8	E	96	100	Right-handed 310
Helix 72	AH9	E	103	116	Right-handed alpha
Helix 73	AI1	E	128	137	Right-handed alpha
Helix 74	AI2	E	150	164	Right-handed alpha
Helix 75	AI3	E	181	188	Right-handed alpha
Helix 76	AI4	E	198	202	Right-handed 310
Helix 77	AI5	E	210	218	Right-handed alpha
Helix 78	AI6	E	223	235	Right-handed alpha
Helix 79	AI7	E	245	255	Right-handed alpha
Helix 80	AI8	E	264	268	Right-handed 310
Helix 81	AI9	E	275	278	Right-handed 310
Helix 82	AJ1	E	279	288	Right-handed alpha
Helix 83	AJ2	E	301	311	Right-handed alpha
Helix 84	AJ3	E	319	353	Right-handed alpha
Helix 85	AJ4	E	356	361	Right-handed alpha
Helix 86	AJ5	F	23	30	Right-handed alpha
Helix 87	AJ6	F	34	43	Right-handed alpha
Helix 88	AJ7	F	48	57	Right-handed alpha
Helix 89	AJ8	F	96	100	Right-handed 310
Helix 90	AJ9	F	103	116	Right-handed alpha
Helix 91	AK1	F	128	137	Right-handed alpha
Helix 92	AK2	F	150	164	Right-handed alpha
Helix 93	AK3	F	181	187	Right-handed alpha
Helix 94	AK4	F	210	217	Right-handed alpha
Helix 95	AK5	F	223	235	Right-handed alpha
Helix 96	AK6	F	245	255	Right-handed alpha
Helix 97	AK7	F	275	288	Right-handed alpha
Helix 98	AK8	F	301	311	Right-handed alpha
Helix 99	AK9	F	319	353	Right-handed alpha
Helix 100	AL1	F	356	362	Right-handed alpha
Helix 101	AL2	G	24	30	Right-handed alpha
Helix 102	AL3	G	34	43	Right-handed alpha
Helix 103	AL4	G	48	57	Right-handed alpha
Helix 104	AL5	G	96	100	Right-handed 310
Helix 105	AL6	G	103	116	Right-handed alpha
Helix 106	AL7	G	128	137	Right-handed alpha
Helix 107	AL8	G	150	164	Right-handed alpha
Helix 108	AL9	G	181	188	Right-handed alpha
Helix 109	AM1	G	195	197	Right-handed 310
Helix 110	AM2	G	198	203	Right-handed alpha
Helix 111	AM3	G	210	218	Right-handed alpha
Helix 112	AM4	G	223	235	Right-handed alpha
Helix 113	AM5	G	245	255	Right-handed alpha
Helix 114	AM6	G	264	268	Right-handed 310
Helix 115	AM7	G	275	278	Right-handed 310
Helix 116	AM8	G	279	288	Right-handed alpha
Helix 117	AM9	G	301	311	Right-handed alpha
Helix 118	AN1	G	319	330	Right-handed alpha
Helix 119	AN2	G	330	352	Right-handed alpha
Helix 120	AN3	G	356	362	Right-handed alpha
Helix 121	AN4	H	21	31	Right-handed alpha
Helix 122	AN5	H	34	43	Right-handed alpha
Helix 123	AN6	H	48	57	Right-handed alpha
Helix 124	AN7	H	96	100	Right-handed 310
Helix 125	AN8	H	103	116	Right-handed alpha
Helix 126	AN9	H	128	137	Right-handed alpha
Helix 127	AO1	H	150	165	Right-handed alpha
Helix 128	AO2	H	181	187	Right-handed alpha
Helix 129	AO3	H	195	199	Right-handed 310
Helix 130	AO4	H	224	235	Right-handed alpha
Helix 131	AO5	H	245	255	Right-handed alpha
Helix 132	AO6	H	264	268	Right-handed 310
Helix 133	AO7	H	275	278	Right-handed 310
Helix 134	AO8	H	279	288	Right-handed alpha
Helix 135	AO9	H	301	311	Right-handed alpha
Helix 136	AP1	H	319	353	Right-handed alpha
Helix 137	AP2	H	356	362	Right-handed alpha

There are 24 sheets in PDB entry 5EBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	366	367	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	80	first strand
Strand 2	A	83	85	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	315	318	parallel
Strand 3	A	293	295	parallel
Strand 4	A	259	262	parallel
Strand 5	A	238	243	parallel
Strand 6	A	169	172	parallel
Strand 7	A	141	145	parallel
Strand 8	A	119	122	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	365	367	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	80	first strand
Strand 2	B	83	85	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	315	318	parallel
Strand 3	B	293	295	parallel
Strand 4	B	259	262	parallel
Strand 5	B	238	243	parallel
Strand 6	B	169	172	parallel
Strand 7	B	141	145	parallel
Strand 8	B	119	122	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	366	367	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	80	first strand
Strand 2	C	83	85	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	119	122	parallel
Strand 3	C	141	145	parallel
Strand 4	C	169	172	parallel
Strand 5	C	238	243	parallel
Strand 6	C	259	262	parallel
Strand 7	C	293	295	parallel
Strand 8	C	315	318	parallel
Strand 9	C	89	91	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	366	367	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	80	first strand
Strand 2	D	83	85	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	315	318	parallel
Strand 3	D	293	295	parallel
Strand 4	D	259	262	parallel
Strand 5	D	238	243	parallel
Strand 6	D	169	172	parallel
Strand 7	D	141	145	parallel
Strand 8	D	119	122	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	63	first strand
Strand 2	E	365	367	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	80	first strand
Strand 2	E	83	85	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	315	318	parallel
Strand 3	E	293	295	parallel
Strand 4	E	259	262	parallel
Strand 5	E	238	243	parallel
Strand 6	E	169	172	parallel
Strand 7	E	141	145	parallel
Strand 8	E	119	122	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	61	62	first strand
Strand 2	F	366	367	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	83	85	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	91	first strand
Strand 2	F	315	318	parallel
Strand 3	F	293	296	parallel
Strand 4	F	259	262	parallel
Strand 5	F	238	243	parallel
Strand 6	F	169	172	parallel
Strand 7	F	141	145	parallel
Strand 8	F	119	122	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	61	62	first strand
Strand 2	G	366	367	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	80	first strand
Strand 2	G	83	85	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	91	first strand
Strand 2	G	315	318	parallel
Strand 3	G	293	295	parallel
Strand 4	G	259	262	parallel
Strand 5	G	238	243	parallel
Strand 6	G	169	172	parallel
Strand 7	G	141	145	parallel
Strand 8	G	119	122	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	63	first strand
Strand 2	H	365	367	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	78	80	first strand
Strand 2	H	83	85	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	89	91	first strand
Strand 2	H	119	122	parallel
Strand 3	H	141	145	parallel
Strand 4	H	166	172	parallel
Strand 5	H	238	243	parallel
Strand 6	H	257	262	parallel
Strand 7	H	293	295	parallel
Strand 8	H	315	318	parallel
Strand 9	H	89	91	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EBU