Analysis of interatomic Contacts of Structural Units in PDB entry:
5EC0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EC0 entry

There is 1 chain in PDB entry 5EC0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5EC0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed alpha
Helix 2
AA2
A
48 55Right-handed 310
Helix 3
AA3
A
73 76Right-handed 310
Helix 4
AA4
A
94 113Right-handed alpha
Helix 5
AA5
A
130 135Right-handed alpha
Helix 6
AA6
A
139 150Right-handed alpha
Helix 7
AA7
A
184 190Right-handed alpha
Helix 8
AA8
A
197 204Right-handed 310
Helix 9
AA9
A
232 234Right-handed 310
Helix 10
AB1
A
243 256Right-handed alpha
Helix 11
AB2
A
262 274Right-handed alpha
Helix 12
AB3
A
292 315Right-handed alpha
Helix 13
AB4
A
329 335Right-handed alpha
Helix 14
AB5
A
335 348Right-handed alpha
Helix 15
AB6
A
348 355Right-handed alpha
Helix 16
AB7
A
364 388Right-handed alpha
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There are 3 sheets in PDB entry 5EC0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 27first strand
Strand 2
A
14 19anti-parallel
Strand 3
A
2 10anti-parallel
Strand 4
A
119 129parallel
Strand 5
A
166 179parallel
Strand 6
A
153 159anti-parallel
Strand 7
A
56 62anti-parallel
Strand 8
A
65 71anti-parallel
Strand 9
A
30 33anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
218 223anti-parallel
Strand 3
A
207 213anti-parallel
Strand 4
A
323 328parallel
Strand 5
A
356 358parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
289 291anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il