Analysis of interatomic Contacts of Structural Units in PDB entry:
5EC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EC6 entry

There is 1 chain in PDB entry 5EC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 15PRO 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5EC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 38Right-handed 310
Helix 2
AA2
A
128 132Right-handed 310
Helix 3
AA3
A
158 162Right-handed 310
Helix 4
AA4
A
164 169Right-handed alpha
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There are 5 sheets in PDB entry 5EC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
48 57anti-parallel
Strand 3
A
65 74anti-parallel
Strand 4
A
80 81anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
148 154anti-parallel
Strand 3
A
136 142anti-parallel
Strand 4
A
115 118anti-parallel
Strand 5
A
108 109anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
195 196anti-parallel
Strand 3
A
206 208anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
188 191anti-parallel
Strand 3
A
174 185anti-parallel
Strand 4
A
298 308anti-parallel
Strand 5
A
283 289anti-parallel
Strand 6
A
256 265anti-parallel
Strand 7
A
246 253anti-parallel
Strand 8
A
235 243anti-parallel
Strand 9
A
220 225anti-parallel
Strand 10
A
210 215anti-parallel
Strand 11
A
174 185anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
276 278anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il