Analysis of interatomic Contacts of Structural Units in PDB entry:
5ECO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ECO entry

There are 6 chains in PDB entry 5ECO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 7	PHE 575
B	LEU 4	LEU 217
C	LEU 4	LEU 217
D	THR 7	PHE 575
E	LEU 4	LEU 217
F	LEU 4	LEU 217

There are100 helices in PDB entry 5ECO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	23	38	Right-handed alpha
Helix 3	AA3	A	42	47	Right-handed alpha
Helix 4	AA4	A	56	65	Right-handed alpha
Helix 5	AA5	A	69	82	Right-handed alpha
Helix 6	AA6	A	114	136	Right-handed alpha
Helix 7	AA7	A	164	171	Right-handed alpha
Helix 8	AA8	A	174	179	Right-handed alpha
Helix 9	AA9	A	189	194	Right-handed alpha
Helix 10	AB1	A	197	202	Right-handed alpha
Helix 11	AB2	A	202	210	Right-handed alpha
Helix 12	AB3	A	211	214	Right-handed 310
Helix 13	AB4	A	224	233	Right-handed alpha
Helix 14	AB5	A	234	236	Right-handed 310
Helix 15	AB6	A	237	247	Right-handed alpha
Helix 16	AB7	A	256	267	Right-handed alpha
Helix 17	AB8	A	271	281	Right-handed alpha
Helix 18	AB9	A	282	284	Right-handed 310
Helix 19	AC1	A	289	295	Right-handed alpha
Helix 20	AC2	A	306	310	Right-handed 310
Helix 21	AC3	A	312	321	Right-handed alpha
Helix 22	AC4	A	356	359	Right-handed 310
Helix 23	AC5	A	437	454	Right-handed alpha
Helix 24	AC6	A	486	500	Right-handed alpha
Helix 25	AC7	A	503	513	Right-handed alpha
Helix 26	AC8	A	526	537	Right-handed alpha
Helix 27	AC9	A	556	561	Right-handed alpha
Helix 28	AD1	B	13	27	Right-handed alpha
Helix 29	AD2	B	41	48	Right-handed alpha
Helix 30	AD3	B	66	78	Right-handed alpha
Helix 31	AD4	B	88	104	Right-handed alpha
Helix 32	AD5	B	104	116	Right-handed alpha
Helix 33	AD6	B	118	139	Right-handed alpha
Helix 34	AD7	B	151	159	Right-handed alpha
Helix 35	AD8	B	163	171	Right-handed alpha
Helix 36	AD9	B	179	190	Right-handed alpha
Helix 37	AE1	B	192	199	Right-handed alpha
Helix 38	AE2	B	201	216	Right-handed alpha
Helix 39	AE3	C	13	27	Right-handed alpha
Helix 40	AE4	C	36	40	Right-handed 310
Helix 41	AE5	C	43	48	Right-handed alpha
Helix 42	AE6	C	66	78	Right-handed alpha
Helix 43	AE7	C	88	104	Right-handed alpha
Helix 44	AE8	C	104	116	Right-handed alpha
Helix 45	AE9	C	118	140	Right-handed alpha
Helix 46	AF1	C	151	159	Right-handed alpha
Helix 47	AF2	C	160	162	Right-handed 310
Helix 48	AF3	C	163	172	Right-handed alpha
Helix 49	AF4	C	174	179	Right-handed alpha
Helix 50	AF5	C	179	190	Right-handed alpha
Helix 51	AF6	C	201	216	Right-handed alpha
Helix 52	AF7	D	9	23	Right-handed alpha
Helix 53	AF8	D	23	38	Right-handed alpha
Helix 54	AF9	D	42	49	Right-handed alpha
Helix 55	AG1	D	56	65	Right-handed alpha
Helix 56	AG2	D	69	82	Right-handed alpha
Helix 57	AG3	D	115	136	Right-handed alpha
Helix 58	AG4	D	164	171	Right-handed alpha
Helix 59	AG5	D	174	180	Right-handed alpha
Helix 60	AG6	D	189	194	Right-handed alpha
Helix 61	AG7	D	199	212	Right-handed alpha
Helix 62	AG8	D	224	247	Right-handed alpha
Helix 63	AG9	D	256	265	Right-handed alpha
Helix 64	AH1	D	271	282	Right-handed alpha
Helix 65	AH2	D	290	295	Right-handed alpha
Helix 66	AH3	D	306	310	Right-handed 310
Helix 67	AH4	D	311	321	Right-handed alpha
Helix 68	AH5	D	346	350	Right-handed 310
Helix 69	AH6	D	378	382	Right-handed 310
Helix 70	AH7	D	437	449	Right-handed alpha
Helix 71	AH8	D	449	454	Right-handed alpha
Helix 72	AH9	D	486	499	Right-handed alpha
Helix 73	AI1	D	503	513	Right-handed alpha
Helix 74	AI2	D	526	537	Right-handed alpha
Helix 75	AI3	D	556	561	Right-handed alpha
Helix 76	AI4	E	13	27	Right-handed alpha
Helix 77	AI5	E	41	48	Right-handed alpha
Helix 78	AI6	E	67	78	Right-handed alpha
Helix 79	AI7	E	88	104	Right-handed alpha
Helix 80	AI8	E	104	115	Right-handed alpha
Helix 81	AI9	E	118	140	Right-handed alpha
Helix 82	AJ1	E	151	159	Right-handed alpha
Helix 83	AJ2	E	163	172	Right-handed alpha
Helix 84	AJ3	E	174	179	Right-handed alpha
Helix 85	AJ4	E	179	192	Right-handed alpha
Helix 86	AJ5	E	201	216	Right-handed alpha
Helix 87	AJ6	F	13	27	Right-handed alpha
Helix 88	AJ7	F	36	40	Right-handed 310
Helix 89	AJ8	F	43	48	Right-handed alpha
Helix 90	AJ9	F	66	78	Right-handed alpha
Helix 91	AK1	F	88	104	Right-handed alpha
Helix 92	AK2	F	104	116	Right-handed alpha
Helix 93	AK3	F	118	140	Right-handed alpha
Helix 94	AK4	F	151	159	Right-handed alpha
Helix 95	AK5	F	160	162	Right-handed 310
Helix 96	AK6	F	163	172	Right-handed alpha
Helix 97	AK7	F	174	179	Right-handed alpha
Helix 98	AK8	F	179	191	Right-handed alpha
Helix 99	AK9	F	192	197	Right-handed alpha
Helix 100	AL1	F	201	216	Right-handed alpha

There are 13 sheets in PDB entry 5ECO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	111	113	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	146	first strand
Strand 2	A	216	223	parallel
Strand 3	A	300	304	parallel
Strand 4	A	325	327	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	161	162	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	339	first strand
Strand 2	A	352	354	anti-parallel
Strand 3	A	416	420	anti-parallel
Strand 4	A	401	413	anti-parallel
Strand 5	A	387	393	anti-parallel
Strand 6	A	360	365	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	467	first strand
Strand 2	A	473	481	anti-parallel
Strand 3	A	515	522	parallel
Strand 4	A	568	571	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	34	first strand
Strand 2	B	6	9	parallel
Strand 3	B	56	59	anti-parallel
Strand 4	B	62	65	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	34	first strand
Strand 2	C	6	9	parallel
Strand 3	C	56	59	anti-parallel
Strand 4	C	62	64	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	98	first strand
Strand 2	D	111	113	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	218	223	parallel
Strand 3	D	300	304	parallel
Strand 4	D	325	327	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	352	354	anti-parallel
Strand 3	D	416	420	anti-parallel
Strand 4	D	401	413	anti-parallel
Strand 5	D	387	394	anti-parallel
Strand 6	D	359	365	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	550	551	first strand
Strand 2	D	459	467	parallel
Strand 3	D	473	481	anti-parallel
Strand 4	D	515	522	parallel
Strand 5	D	568	571	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	34	first strand
Strand 2	E	6	9	parallel
Strand 3	E	56	59	anti-parallel
Strand 4	E	62	64	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	31	34	first strand
Strand 2	F	6	9	parallel
Strand 3	F	56	59	anti-parallel
Strand 4	F	62	65	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ECO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ECO