Analysis of interatomic Contacts of Structural Units in PDB entry:
5ED8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ED8 entry

There is 1 chain in PDB entry 5ED8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 454ALA 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5ED8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
462 479Right-handed alpha
Helix 2
AA2
A
480 482Right-handed 310
Helix 3
AA3
A
485 498Right-handed alpha
Helix 4
AA4
A
506 518Right-handed alpha
Helix 5
AA5
A
533 537Right-handed 310
Helix 6
AA6
A
542 545Right-handed 310
Helix 7
AA7
A
569 575Right-handed 310
Helix 8
AA8
A
612 620Right-handed 310
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There are 4 sheets in PDB entry 5ED8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
539 540first strand
Strand 2
A
591 609anti-parallel
Strand 3
A
656 660anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
642 648first strand
Strand 2
A
627 633anti-parallel
Strand 3
A
669 676anti-parallel
Strand 4
A
591 609anti-parallel
Strand 5
A
690 697anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
562 566anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 587first strand
Strand 2
A
685 688anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il