Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EDJ entry

There is 1 chain in PDB entry 5EDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 44ASN 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5EDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 77Right-handed 310
Helix 2
AA2
A
125 136Right-handed alpha
Helix 3
AA3
A
155 163Right-handed alpha
Helix 4
AA4
A
246 267Right-handed alpha
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There are 3 sheets in PDB entry 5EDJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
87 90anti-parallel
Strand 3
A
81 82anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
98 99parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
102 111anti-parallel
Strand 3
A
140 147anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
220 228anti-parallel
Strand 6
A
203 209anti-parallel
Strand 7
A
192 197anti-parallel
Strand 8
A
175 180anti-parallel
Strand 9
A
166 168anti-parallel
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