Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EDK entry

There are 7 chains in PDB entry 5EDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8LEU 13
A
 ARG 15ARG 15
A
 CYS 17VAL 18
A
 THR 21TYR 24
A
 ALA 27PHE 28
A
 ALA 30LEU 31
A
 SER 33GLU 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 5EDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
33 47Right-handed alpha
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
150 154Right-handed 310
Helix 5
AA5
A
175 180Right-handed alpha
Helix 6
AA6
A
260 265Right-handed alpha
Helix 7
AA7
A
267 271Right-handed 310
Helix 8
AA8
A
286 292Right-handed alpha
Helix 9
AA9
A
339 342Right-handed 310
Helix 10
AB1
A
353 355Right-handed 310
Helix 11
AB2
A
422 430Right-handed alpha
Helix 12
AB3
A
467 473Right-handed alpha
Helix 13
AB4
A
544 556Right-handed alpha
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There are 4 sheets in PDB entry 5EDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
125 128anti-parallel
Strand 3
A
135 137anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 304first strand
Strand 2
A
459 461anti-parallel
Strand 3
A
435 438anti-parallel
Strand 4
A
506 510anti-parallel
Strand 5
A
517 523anti-parallel
Strand 6
A
536 539anti-parallel
Strand 7
A
483 486anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 318first strand
Strand 2
A
324 330anti-parallel
Strand 3
A
335 338anti-parallel
Strand 4
A
399 403anti-parallel
Strand 5
A
375 384anti-parallel
Strand 6
A
357 361anti-parallel
Strand 7
A
313 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 345first strand
Strand 2
A
350 351anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il