Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EDM entry

There are 8 chains in PDB entry 5EDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 5
A
 VAL 8LEU 13
A
 ARG 15ARG 15
A
 CYS 17VAL 18
A
 THR 21TYR 24
A
 ALA 27PHE 28
A
 ALA 30LEU 31
A
 SER 33GLU 568
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5EDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
23 32Right-handed alpha
Helix 3
AA3
A
33 47Right-handed alpha
Helix 4
AA4
A
53 63Right-handed alpha
Helix 5
AA5
A
158 162Right-handed 310
Helix 6
AA6
A
182 190Right-handed alpha
Helix 7
AA7
A
237 241Right-handed 310
Helix 8
AA8
A
268 273Right-handed alpha
Helix 9
AA9
A
285 289Right-handed 310
Helix 10
AB1
A
294 298Right-handed 310
Helix 11
AB2
A
301 306Right-handed 310
Helix 12
AB3
A
347 350Right-handed 310
Helix 13
AB4
A
354 357Right-handed 310
Helix 14
AB5
A
361 363Right-handed 310
Helix 15
AB6
A
428 438Right-handed alpha
Helix 16
AB7
A
448 455Right-handed alpha
Helix 17
AB8
A
475 482Right-handed alpha
Helix 18
AB9
A
534 538Right-handed 310
Helix 19
AC1
A
552 567Right-handed alpha
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There are 5 sheets in PDB entry 5EDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
135 137anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 218first strand
Strand 2
A
226 228anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 312first strand
Strand 2
A
467 471anti-parallel
Strand 3
A
442 446anti-parallel
Strand 4
A
514 518anti-parallel
Strand 5
A
525 531anti-parallel
Strand 6
A
544 548anti-parallel
Strand 7
A
491 494anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
365 369anti-parallel
Strand 3
A
321 326anti-parallel
Strand 4
A
331 338anti-parallel
Strand 5
A
343 346anti-parallel
Strand 6
A
407 411anti-parallel
Strand 7
A
387 392anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
358 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il