Analysis of interatomic Contacts of Structural Units in PDB entry:
5EDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EDU entry

There are 2 chains in PDB entry 5EDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 111ARG 835
A
 LYS 114ASN 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 5EDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
124 140Right-handed alpha
Helix 2
AA2
B
150 161Right-handed alpha
Helix 3
AA3
B
174 181Right-handed alpha
Helix 4
AA4
B
190 195Right-handed alpha
Helix 5
AA5
B
198 205Right-handed alpha
Helix 6
AA6
B
236 238Right-handed 310
Helix 7
AA7
B
239 249Right-handed alpha
Helix 8
AA8
B
265 270Right-handed alpha
Helix 9
AA9
B
293 309Right-handed alpha
Helix 10
AB1
B
317 327Right-handed alpha
Helix 11
AB2
B
336 338Right-handed 310
Helix 12
AB3
B
339 346Right-handed alpha
Helix 13
AB4
B
380 391Right-handed alpha
Helix 14
AB5
B
394 405Right-handed alpha
Helix 15
AB6
B
412 420Right-handed alpha
Helix 16
AB7
B
422 435Right-handed alpha
Helix 17
AB8
B
443 459Right-handed alpha
Helix 18
AB9
B
464 474Right-handed alpha
Helix 19
AC1
B
486 491Right-handed 310
Helix 20
AC2
B
504 517Right-handed alpha
Helix 21
AC3
B
532 537Right-handed alpha
Helix 22
AC4
B
541 551Right-handed alpha
Helix 23
AC5
B
552 554Right-handed 310
Helix 24
AC6
B
555 564Right-handed alpha
Helix 25
AC7
B
574 594Right-handed alpha
Helix 26
AC8
B
624 638Right-handed alpha
Helix 27
AC9
B
653 660Right-handed alpha
Helix 28
AD1
B
693 697Right-handed 310
Helix 29
AD2
B
711 722Right-handed alpha
Helix 30
AD3
B
722 731Right-handed alpha
Helix 31
AD4
B
755 767Right-handed alpha
Helix 32
AD5
B
768 772Right-handed 310
Helix 33
AD6
B
783 799Right-handed alpha
Helix 34
AD7
B
813 828Right-handed alpha
Helix 35
AD8
A
124 132Right-handed alpha
Helix 36
AD9
A
150 160Right-handed alpha
Helix 37
AE1
A
174 182Right-handed alpha
Helix 38
AE2
A
198 203Right-handed alpha
Helix 39
AE3
A
236 238Right-handed 310
Helix 40
AE4
A
239 248Right-handed alpha
Helix 41
AE5
A
249 251Right-handed 310
Helix 42
AE6
A
265 270Right-handed alpha
Helix 43
AE7
A
293 309Right-handed alpha
Helix 44
AE8
A
317 327Right-handed alpha
Helix 45
AE9
A
336 338Right-handed 310
Helix 46
AF1
A
339 345Right-handed alpha
Helix 47
AF2
A
380 392Right-handed alpha
Helix 48
AF3
A
394 403Right-handed alpha
Helix 49
AF4
A
412 417Right-handed alpha
Helix 50
AF5
A
422 434Right-handed alpha
Helix 51
AF6
A
443 460Right-handed alpha
Helix 52
AF7
A
464 477Right-handed alpha
Helix 53
AF8
A
486 491Right-handed 310
Helix 54
AF9
A
504 517Right-handed alpha
Helix 55
AG1
A
518 523Right-handed alpha
Helix 56
AG2
A
532 537Right-handed alpha
Helix 57
AG3
A
541 550Right-handed alpha
Helix 58
AG4
A
551 554Right-handed 310
Helix 59
AG5
A
555 564Right-handed alpha
Helix 60
AG6
A
574 595Right-handed alpha
Helix 61
AG7
A
624 636Right-handed alpha
Helix 62
AG8
A
653 660Right-handed alpha
Helix 63
AG9
A
675 678Right-handed 310
Helix 64
AH1
A
693 697Right-handed 310
Helix 65
AH2
A
711 722Right-handed alpha
Helix 66
AH3
A
722 731Right-handed alpha
Helix 67
AH4
A
755 767Right-handed alpha
Helix 68
AH5
A
768 772Right-handed 310
Helix 69
AH6
A
783 799Right-handed alpha
Helix 70
AH7
A
813 827Right-handed alpha
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There are 11 sheets in PDB entry 5EDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
115 118parallel
Strand 3
B
167 171parallel
Strand 4
B
366 374anti-parallel
Strand 5
B
214 219anti-parallel
Strand 6
B
409 410anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 146first strand
Strand 2
B
115 118parallel
Strand 3
B
167 171parallel
Strand 4
B
366 374anti-parallel
Strand 5
B
436 437parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
210 211anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 255first strand
Strand 2
B
330 335parallel
Strand 3
B
222 226anti-parallel
Strand 4
B
350 353anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
275 280first strand
Strand 2
B
283 290anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 526first strand
Strand 2
B
481 484parallel
Strand 3
B
600 603parallel
Strand 4
B
774 778parallel
Strand 5
B
734 739parallel
Strand 6
B
643 647parallel
Strand 7
B
666 673parallel
Strand 8
B
700 705parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
115 118parallel
Strand 3
A
167 171parallel
Strand 4
A
368 374anti-parallel
Strand 5
A
214 219anti-parallel
Strand 6
A
409 410anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
210 211anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 255first strand
Strand 2
A
330 335parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
350 353anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 280first strand
Strand 2
A
283 290anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 526first strand
Strand 2
A
481 484parallel
Strand 3
A
600 603parallel
Strand 4
A
774 778parallel
Strand 5
A
734 739parallel
Strand 6
A
643 647parallel
Strand 7
A
666 673parallel
Strand 8
A
700 705parallel
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