Analysis of interatomic Contacts of Structural Units in PDB entry:
5EE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EE0 entry

There is 1 chain in PDB entry 5EE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 16ASN 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5EE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 47Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
70 81Right-handed alpha
Helix 4
AA4
A
109 117Right-handed alpha
Helix 5
AA5
A
142 176Right-handed alpha
Helix 6
AA6
A
178 197Right-handed alpha
Helix 7
AA7
A
200 204Right-handed 310
Helix 8
AA8
A
207 218Right-handed alpha
Helix 9
AA9
A
219 223Right-handed 310
Helix 10
AB1
A
232 239Right-handed alpha
Helix 11
AB2
A
243 254Right-handed alpha
Helix 12
AB3
A
263 272Right-handed alpha
Helix 13
AB4
A
274 286Right-handed alpha
Helix 14
AB5
A
290 302Right-handed alpha
Helix 15
AB6
A
325 332Right-handed alpha
Helix 16
AB7
A
334 340Right-handed alpha
Helix 17
AB8
A
349 356Right-handed alpha
Helix 18
AB9
A
357 364Right-handed alpha
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There are 3 sheets in PDB entry 5EE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
27 30parallel
Strand 4
A
122 127parallel
Strand 5
A
225 230parallel
Strand 6
A
259 262parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
314 321parallel
Strand 3
A
304 310anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
341 348anti-parallel
Strand 3
A
380 386anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il