Analysis of interatomic Contacts of Structural Units in PDB entry:
5EE1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EE1 entry

There is 1 chain in PDB entry 5EE1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15ASN 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 5EE1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 48Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
70 81Right-handed alpha
Helix 4
AA4
A
96 99Right-handed 310
Helix 5
AA5
A
109 117Right-handed alpha
Helix 6
AA6
A
142 176Right-handed alpha
Helix 7
AA7
A
178 197Right-handed alpha
Helix 8
AA8
A
200 204Right-handed 310
Helix 9
AA9
A
207 218Right-handed alpha
Helix 10
AB1
A
219 223Right-handed 310
Helix 11
AB2
A
232 238Right-handed alpha
Helix 12
AB3
A
243 253Right-handed alpha
Helix 13
AB4
A
263 272Right-handed alpha
Helix 14
AB5
A
274 286Right-handed alpha
Helix 15
AB6
A
290 302Right-handed alpha
Helix 16
AB7
A
325 334Right-handed alpha
Helix 17
AB8
A
334 340Right-handed alpha
Helix 18
AB9
A
348 356Right-handed alpha
Helix 19
AC1
A
357 364Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5EE1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
27 30parallel
Strand 4
A
121 127parallel
Strand 5
A
225 230parallel
Strand 6
A
259 262parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
314 321parallel
Strand 3
A
304 310anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
341 347anti-parallel
Strand 3
A
381 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il