Analysis of interatomic Contacts of Structural Units in PDB entry:
5EE4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EE4 entry

There are 6 chains in PDB entry 5EE4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 15	VAL 320
B	PRO 15	VAL 320
C	VAL 1	ARG 141
D	VAL 1	HIS 146
E	VAL 1	ARG 141
F	GLU 6	HIS 146

There are 47 helices in PDB entry 5EE4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed 310
Helix 2	AA2	A	128	132	Right-handed 310
Helix 3	AA3	A	158	162	Right-handed 310
Helix 4	AA4	A	164	169	Right-handed alpha
Helix 5	AA5	B	34	38	Right-handed 310
Helix 6	AA6	B	128	132	Right-handed 310
Helix 7	AA7	B	158	162	Right-handed 310
Helix 8	AA8	B	164	169	Right-handed alpha
Helix 9	AA9	C	3	18	Right-handed alpha
Helix 10	AB1	C	20	36	Right-handed alpha
Helix 11	AB2	C	37	43	Right-handed 310
Helix 12	AB3	C	52	72	Right-handed alpha
Helix 13	AB4	C	75	80	Right-handed alpha
Helix 14	AB5	C	80	89	Right-handed alpha
Helix 15	AB6	C	94	113	Right-handed alpha
Helix 16	AB7	C	118	137	Right-handed alpha
Helix 17	AB8	D	4	18	Right-handed alpha
Helix 18	AB9	D	22	35	Right-handed alpha
Helix 19	AC1	D	36	46	Right-handed 310
Helix 20	AC2	D	50	56	Right-handed alpha
Helix 21	AC3	D	57	76	Right-handed alpha
Helix 22	AC4	D	77	79	Right-handed 310
Helix 23	AC5	D	80	85	Right-handed alpha
Helix 24	AC6	D	85	95	Right-handed alpha
Helix 25	AC7	D	100	119	Right-handed alpha
Helix 26	AC8	D	120	122	Right-handed 310
Helix 27	AC9	D	123	142	Right-handed alpha
Helix 28	AD1	D	143	146	Right-handed 310
Helix 29	AD2	E	3	18	Right-handed alpha
Helix 30	AD3	E	20	36	Right-handed alpha
Helix 31	AD4	E	37	43	Right-handed 310
Helix 32	AD5	E	52	72	Right-handed alpha
Helix 33	AD6	E	75	80	Right-handed alpha
Helix 34	AD7	E	80	89	Right-handed alpha
Helix 35	AD8	E	94	113	Right-handed alpha
Helix 36	AD9	E	118	137	Right-handed alpha
Helix 37	AE1	F	7	18	Right-handed alpha
Helix 38	AE2	F	22	35	Right-handed alpha
Helix 39	AE3	F	36	46	Right-handed 310
Helix 40	AE4	F	50	56	Right-handed alpha
Helix 41	AE5	F	57	76	Right-handed alpha
Helix 42	AE6	F	80	85	Right-handed alpha
Helix 43	AE7	F	85	95	Right-handed alpha
Helix 44	AE8	F	100	119	Right-handed alpha
Helix 45	AE9	F	120	122	Right-handed 310
Helix 46	AF1	F	123	142	Right-handed alpha
Helix 47	AF2	F	143	146	Right-handed 310

There are 10 sheets in PDB entry 5EE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	48	57	anti-parallel
Strand 3	A	65	74	anti-parallel
Strand 4	A	80	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	148	154	anti-parallel
Strand 3	A	136	142	anti-parallel
Strand 4	A	115	118	anti-parallel
Strand 5	A	108	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	195	196	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	188	191	anti-parallel
Strand 3	A	174	184	anti-parallel
Strand 4	A	298	308	anti-parallel
Strand 5	A	283	289	anti-parallel
Strand 6	A	256	265	anti-parallel
Strand 7	A	246	253	anti-parallel
Strand 8	A	235	243	anti-parallel
Strand 9	A	220	225	anti-parallel
Strand 10	A	210	215	anti-parallel
Strand 11	A	174	184	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	276	278	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	31	first strand
Strand 2	B	48	57	anti-parallel
Strand 3	B	65	74	anti-parallel
Strand 4	B	80	81	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	43	first strand
Strand 2	B	148	154	anti-parallel
Strand 3	B	136	142	anti-parallel
Strand 4	B	115	118	anti-parallel
Strand 5	B	108	109	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	100	first strand
Strand 2	B	195	196	anti-parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	188	191	anti-parallel
Strand 3	B	174	184	anti-parallel
Strand 4	B	298	308	anti-parallel
Strand 5	B	283	289	anti-parallel
Strand 6	B	256	265	anti-parallel
Strand 7	B	246	253	anti-parallel
Strand 8	B	235	243	anti-parallel
Strand 9	B	220	225	anti-parallel
Strand 10	B	210	215	anti-parallel
Strand 11	B	174	184	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	276	278	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EE4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EE4