Analysis of interatomic Contacts of Structural Units in PDB entry:
5EE9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EE9 entry

There are 2 chains in PDB entry 5EE9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 14ASN 387
B
 GLU 14ASN 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 5EE9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 46Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
70 76Right-handed alpha
Helix 4
AA4
A
112 117Right-handed alpha
Helix 5
AA5
A
142 174Right-handed alpha
Helix 6
AA6
A
178 197Right-handed alpha
Helix 7
AA7
A
200 204Right-handed 310
Helix 8
AA8
A
207 215Right-handed alpha
Helix 9
AA9
A
219 223Right-handed 310
Helix 10
AB1
A
232 238Right-handed alpha
Helix 11
AB2
A
243 254Right-handed alpha
Helix 12
AB3
A
263 272Right-handed alpha
Helix 13
AB4
A
274 286Right-handed alpha
Helix 14
AB5
A
290 302Right-handed alpha
Helix 15
AB6
A
325 332Right-handed alpha
Helix 16
AB7
A
334 340Right-handed alpha
Helix 17
AB8
A
348 355Right-handed alpha
Helix 18
AB9
A
357 365Right-handed alpha
Helix 19
AC1
B
36 46Right-handed alpha
Helix 20
AC2
B
50 54Right-handed 310
Helix 21
AC3
B
70 81Right-handed alpha
Helix 22
AC4
B
96 99Right-handed 310
Helix 23
AC5
B
109 117Right-handed alpha
Helix 24
AC6
B
142 174Right-handed alpha
Helix 25
AC7
B
178 197Right-handed alpha
Helix 26
AC8
B
207 218Right-handed alpha
Helix 27
AC9
B
219 223Right-handed 310
Helix 28
AD1
B
232 239Right-handed alpha
Helix 29
AD2
B
243 254Right-handed alpha
Helix 30
AD3
B
263 272Right-handed alpha
Helix 31
AD4
B
274 285Right-handed alpha
Helix 32
AD5
B
290 302Right-handed alpha
Helix 33
AD6
B
325 332Right-handed alpha
Helix 34
AD7
B
334 340Right-handed alpha
Helix 35
AD8
B
348 356Right-handed alpha
Helix 36
AD9
B
357 364Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5EE9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
26 30parallel
Strand 4
A
121 127parallel
Strand 5
A
225 230parallel
Strand 6
A
259 262parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
314 321parallel
Strand 3
A
304 310anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
341 347anti-parallel
Strand 3
A
381 386anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
26 30parallel
Strand 4
B
121 127parallel
Strand 5
B
225 230parallel
Strand 6
B
259 262parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 86first strand
Strand 2
B
314 321parallel
Strand 3
B
304 310anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
341 347anti-parallel
Strand 3
B
381 386anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il