Analysis of interatomic Contacts of Structural Units in PDB entry:
5EEG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EEG entry

There are 2 chains in PDB entry 5EEG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 15ALA 352
B
 ASP 15ALA 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5EEG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 25Right-handed alpha
Helix 2
AA2
A
26 38Right-handed alpha
Helix 3
AA3
A
39 46Right-handed alpha
Helix 4
AA4
A
50 59Right-handed alpha
Helix 5
AA5
A
61 75Right-handed alpha
Helix 6
AA6
A
91 96Right-handed 310
Helix 7
AA7
A
102 108Right-handed alpha
Helix 8
AA8
A
111 117Right-handed alpha
Helix 9
AA9
A
118 121Right-handed 310
Helix 10
AB1
A
122 130Right-handed alpha
Helix 11
AB2
A
133 139Right-handed alpha
Helix 12
AB3
A
141 149Right-handed alpha
Helix 13
AB4
A
149 161Right-handed alpha
Helix 14
AB5
A
163 168Right-handed alpha
Helix 15
AB6
A
168 174Right-handed alpha
Helix 16
AB7
A
191 201Right-handed alpha
Helix 17
AB8
A
213 225Right-handed alpha
Helix 18
AB9
A
254 258Right-handed 310
Helix 19
AC1
A
259 273Right-handed alpha
Helix 20
AC2
A
288 292Right-handed 310
Helix 21
AC3
A
294 309Right-handed alpha
Helix 22
AC4
A
314 325Right-handed alpha
Helix 23
AC5
B
16 25Right-handed alpha
Helix 24
AC6
B
26 38Right-handed alpha
Helix 25
AC7
B
39 46Right-handed alpha
Helix 26
AC8
B
50 59Right-handed alpha
Helix 27
AC9
B
61 75Right-handed alpha
Helix 28
AD1
B
91 96Right-handed 310
Helix 29
AD2
B
102 108Right-handed alpha
Helix 30
AD3
B
111 117Right-handed alpha
Helix 31
AD4
B
118 121Right-handed 310
Helix 32
AD5
B
122 130Right-handed alpha
Helix 33
AD6
B
133 139Right-handed alpha
Helix 34
AD7
B
141 148Right-handed alpha
Helix 35
AD8
B
149 161Right-handed alpha
Helix 36
AD9
B
163 168Right-handed alpha
Helix 37
AE1
B
168 174Right-handed alpha
Helix 38
AE2
B
191 201Right-handed alpha
Helix 39
AE3
B
213 225Right-handed alpha
Helix 40
AE4
B
254 258Right-handed 310
Helix 41
AE5
B
259 273Right-handed alpha
Helix 42
AE6
B
288 292Right-handed 310
Helix 43
AE7
B
294 309Right-handed alpha
Helix 44
AE8
B
314 325Right-handed alpha
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There are 4 sheets in PDB entry 5EEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
86 88anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
205 210parallel
Strand 3
A
182 186parallel
Strand 4
A
246 252parallel
Strand 5
A
274 284parallel
Strand 6
A
345 351anti-parallel
Strand 7
A
327 334anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 80first strand
Strand 2
B
86 88anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 235first strand
Strand 2
B
205 210parallel
Strand 3
B
182 186parallel
Strand 4
B
246 252parallel
Strand 5
B
274 284parallel
Strand 6
B
345 351anti-parallel
Strand 7
B
327 334anti-parallel
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