Analysis of interatomic Contacts of Structural Units in PDB entry:
5EER


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EER entry

There is 1 chain in PDB entry 5EER (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2LEU 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 5EER. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
41 47Right-handed alpha
Helix 3
AA3
A
56 70Right-handed alpha
Helix 4
AA4
A
82 93Right-handed alpha
Helix 5
AA5
A
108 122Right-handed alpha
Helix 6
AA6
A
123 125Right-handed 310
Helix 7
AA7
A
143 159Right-handed alpha
Helix 8
AA8
A
220 233Right-handed alpha
Helix 9
AA9
A
242 247Right-handed 310
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There are 2 sheets in PDB entry 5EER. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
3 8parallel
Strand 3
A
50 53parallel
Strand 4
A
73 76parallel
Strand 5
A
100 103parallel
Strand 6
A
237 240parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
184 190anti-parallel
Strand 3
A
127 134parallel
Strand 4
A
196 204anti-parallel
Strand 5
A
207 215anti-parallel
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