Analysis of interatomic Contacts of Structural Units in PDB entry:
5EF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EF4 entry

There are 2 chains in PDB entry 5EF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5ASN 346
B
 HIS 21PRO 348
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 5EF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
32 47Right-handed alpha
Helix 3
AA3
A
53 71Right-handed alpha
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
138 141Right-handed 310
Helix 7
AA7
A
154 173Right-handed alpha
Helix 8
AA8
A
179 187Right-handed alpha
Helix 9
AA9
A
191 195Right-handed 310
Helix 10
AB1
A
197 208Right-handed alpha
Helix 11
AB2
A
227 231Right-handed 310
Helix 12
AB3
A
247 256Right-handed alpha
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
332 336Right-handed 310
Helix 15
AB6
B
26 31Right-handed 310
Helix 16
AB7
B
32 47Right-handed alpha
Helix 17
AB8
B
53 72Right-handed alpha
Helix 18
AB9
B
88 97Right-handed alpha
Helix 19
AC1
B
100 108Right-handed alpha
Helix 20
AC2
B
138 141Right-handed 310
Helix 21
AC3
B
154 173Right-handed alpha
Helix 22
AC4
B
179 187Right-handed alpha
Helix 23
AC5
B
191 195Right-handed 310
Helix 24
AC6
B
197 208Right-handed alpha
Helix 25
AC7
B
227 231Right-handed 310
Helix 26
AC8
B
247 256Right-handed alpha
Helix 27
AC9
B
268 273Right-handed alpha
Helix 28
AD1
B
332 336Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 5EF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
321 325parallel
Strand 4
A
304 309anti-parallel
Strand 5
A
289 298anti-parallel
Strand 6
A
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 79first strand
Strand 2
A
274 279anti-parallel
Strand 3
A
321 325parallel
Strand 4
A
304 309anti-parallel
Strand 5
A
289 298anti-parallel
Strand 6
A
260 264anti-parallel
Strand 7
A
340 344anti-parallel
Strand 8
A
239 242anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
321 325parallel
Strand 4
B
304 309anti-parallel
Strand 5
B
289 298anti-parallel
Strand 6
B
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
274 279anti-parallel
Strand 3
B
321 325parallel
Strand 4
B
304 309anti-parallel
Strand 5
B
289 298anti-parallel
Strand 6
B
260 264anti-parallel
Strand 7
B
340 344anti-parallel
Strand 8
B
239 242anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il