Analysis of interatomic Contacts of Structural Units in PDB entry:
5EF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EF5 entry

There are 2 chains in PDB entry 5EF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 UNK 10UNK 4847
A
 UNK 1UNK 4833
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 5EF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
15 20Right-handed alpha
Helix 2
AA2
E
51 70Right-handed alpha
Helix 3
AA3
E
82 97Right-handed alpha
Helix 4
AA4
E
137 159Right-handed alpha
Helix 5
AA5
E
184 192Right-handed alpha
Helix 6
AA6
E
192 205Right-handed alpha
Helix 7
AA7
E
212 218Right-handed alpha
Helix 8
AA8
E
228 249Right-handed alpha
Helix 9
AA9
E
250 260Right-handed alpha
Helix 10
AB1
E
261 282Right-handed alpha
Helix 11
AB2
E
297 314Right-handed alpha
Helix 12
AB3
E
322 336Right-handed alpha
Helix 13
AB4
E
338 342Right-handed 310
Helix 14
AB5
E
348 358Right-handed alpha
Helix 15
AB6
E
361 374Right-handed alpha
Helix 16
AB7
E
377 387Right-handed alpha
Helix 17
AB8
E
388 396Right-handed alpha
Helix 18
AB9
E
400 418Right-handed alpha
Helix 19
AC1
E
420 428Right-handed alpha
Helix 20
AC2
E
430 439Right-handed alpha
Helix 21
AC3
E
455 468Right-handed alpha
Helix 22
AC4
E
470 480Right-handed alpha
Helix 23
AC5
E
481 492Right-handed alpha
Helix 24
AC6
E
495 510Right-handed alpha
Helix 25
AC7
E
513 524Right-handed alpha
Helix 26
AC8
E
524 532Right-handed alpha
Helix 27
AC9
E
533 535Right-handed 310
Helix 28
AD1
E
537 552Right-handed alpha
Helix 29
AD2
E
558 575Right-handed alpha
Helix 30
AD3
E
576 578Right-handed 310
Helix 31
AD4
E
580 612Right-handed alpha
Helix 32
AD5
E
1515 1529Right-handed alpha
Helix 33
AD6
E
1531 1552Right-handed alpha
Helix 34
AD7
E
1555 1565Right-handed alpha
Helix 35
AD8
E
3025 3036Right-handed alpha
Helix 36
AD9
E
4523 4532Right-handed alpha
Helix 37
AE1
A
2 6Right-handed alpha
Helix 38
AE2
A
15 19Right-handed 310
Helix 39
AE3
A
62 80Right-handed alpha
Helix 40
AE4
A
94 109Right-handed alpha
Helix 41
AE5
A
134 137Right-handed 310
Helix 42
AE6
A
155 176Right-handed alpha
Helix 43
AE7
A
199 207Right-handed alpha
Helix 44
AE8
A
207 220Right-handed alpha
Helix 45
AE9
A
227 233Right-handed alpha
Helix 46
AF1
A
243 264Right-handed alpha
Helix 47
AF2
A
265 275Right-handed alpha
Helix 48
AF3
A
276 296Right-handed alpha
Helix 49
AF4
A
313 331Right-handed alpha
Helix 50
AF5
A
342 356Right-handed alpha
Helix 51
AF6
A
360 364Right-handed 310
Helix 52
AF7
A
368 376Right-handed alpha
Helix 53
AF8
A
381 394Right-handed alpha
Helix 54
AF9
A
396 407Right-handed alpha
Helix 55
AG1
A
408 416Right-handed alpha
Helix 56
AG2
A
420 438Right-handed alpha
Helix 57
AG3
A
440 448Right-handed alpha
Helix 58
AG4
A
450 459Right-handed alpha
Helix 59
AG5
A
471 473Right-handed 310
Helix 60
AG6
A
474 488Right-handed alpha
Helix 61
AG7
A
490 500Right-handed alpha
Helix 62
AG8
A
501 512Right-handed alpha
Helix 63
AG9
A
515 530Right-handed alpha
Helix 64
AH1
A
533 544Right-handed alpha
Helix 65
AH2
A
544 552Right-handed alpha
Helix 66
AH3
A
553 555Right-handed 310
Helix 67
AH4
A
557 572Right-handed alpha
Helix 68
AH5
A
578 595Right-handed alpha
Helix 69
AH6
A
596 598Right-handed 310
Helix 70
AH7
A
600 618Right-handed alpha
Helix 71
AH8
A
618 633Right-handed alpha
Helix 72
AH9
A
1506 1520Right-handed alpha
Helix 73
AI1
A
1522 1543Right-handed alpha
Helix 74
AI2
A
1546 1557Right-handed alpha
Helix 75
AI3
A
3016 3027Right-handed alpha
Helix 76
AI4
A
4514 4522Right-handed 310
Helix 77
AI5
A
4714 4718Right-handed 310
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There are 19 sheets in PDB entry 5EF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
74 79first strand
Strand 2
E
41 46parallel
Strand 3
E
99 103parallel
Strand 4
E
129 133parallel
Strand 5
E
163 167parallel
Strand 6
E
287 288anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
118 119first strand
Strand 2
E
123 124anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4536 4542first strand
Strand 2
E
4841 4846anti-parallel
Strand 3
E
4832 4834anti-parallel
Strand 4
E
4824 4825anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4549 4552first strand
Strand 2
E
4559 4562anti-parallel
Strand 3
E
4568 4571anti-parallel
Strand 4
E
4580 4582anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4592 4598first strand
Strand 2
E
4605 4610anti-parallel
Strand 3
E
4615 4618anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4640 4643first strand
Strand 2
E
4650 4653anti-parallel
Strand 3
E
4658 4661anti-parallel
Strand 4
E
4671 4674anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4681 4686first strand
Strand 2
E
4693 4698anti-parallel
Strand 3
E
4702 4707anti-parallel
Strand 4
E
4716 4721anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4732 4734first strand
Strand 2
E
4740 4742anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4749 4750first strand
Strand 2
E
4764 4765anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4771 4773first strand
Strand 2
E
4783 4787anti-parallel
Strand 3
E
4791 4795anti-parallel
Strand 4
E
4803 4806anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
41 46parallel
Strand 3
A
111 115parallel
Strand 4
A
146 150parallel
Strand 5
A
178 182parallel
Strand 6
A
301 303anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
139 142anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4528 4532first strand
Strand 2
A
4824 4827anti-parallel
Strand 3
A
4814 4817anti-parallel
Strand 4
A
4806 4807anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4538 4543first strand
Strand 2
A
4550 4554anti-parallel
Strand 3
A
4559 4562anti-parallel
Strand 4
A
4571 4573anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4583 4588first strand
Strand 2
A
4597 4601anti-parallel
Strand 3
A
4605 4609anti-parallel
Strand 4
A
4620 4625anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4632 4636first strand
Strand 2
A
4641 4645anti-parallel
Strand 3
A
4650 4655anti-parallel
Strand 4
A
4664 4666anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4676 4678first strand
Strand 2
A
4685 4688anti-parallel
Strand 3
A
4695 4699anti-parallel
Strand 4
A
4708 4712anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4733 4736first strand
Strand 2
A
4741 4745anti-parallel
Strand 3
A
4755 4757anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4763 4768first strand
Strand 2
A
4774 4779anti-parallel
Strand 3
A
4784 4788anti-parallel
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