Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EFD entry

There are 2 chains in PDB entry 5EFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1ASP 354
B
 VAL 1ASP 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5EFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 8Right-handed 310
Helix 2
AA2
A
10 15Right-handed alpha
Helix 3
AA3
A
26 30Right-handed 310
Helix 4
AA4
A
31 42Right-handed alpha
Helix 5
AA5
A
52 57Right-handed alpha
Helix 6
AA6
A
65 78Right-handed alpha
Helix 7
AA7
A
94 99Right-handed 310
Helix 8
AA8
A
105 109Right-handed 310
Helix 9
AA9
A
111 138Right-handed alpha
Helix 10
AB1
A
164 171Right-handed alpha
Helix 11
AB2
A
172 187Right-handed alpha
Helix 12
AB3
A
203 218Right-handed alpha
Helix 13
AB4
A
237 251Right-handed alpha
Helix 14
AB5
A
275 279Right-handed 310
Helix 15
AB6
A
280 301Right-handed alpha
Helix 16
AB7
A
318 328Right-handed alpha
Helix 17
AB8
A
346 354Right-handed alpha
Helix 18
AB9
B
4 8Right-handed 310
Helix 19
AC1
B
10 15Right-handed alpha
Helix 20
AC2
B
26 30Right-handed 310
Helix 21
AC3
B
31 42Right-handed alpha
Helix 22
AC4
B
52 57Right-handed alpha
Helix 23
AC5
B
65 78Right-handed alpha
Helix 24
AC6
B
94 99Right-handed 310
Helix 25
AC7
B
105 109Right-handed 310
Helix 26
AC8
B
111 138Right-handed alpha
Helix 27
AC9
B
164 171Right-handed alpha
Helix 28
AD1
B
172 187Right-handed alpha
Helix 29
AD2
B
203 218Right-handed alpha
Helix 30
AD3
B
237 250Right-handed alpha
Helix 31
AD4
B
280 301Right-handed alpha
Helix 32
AD5
B
318 328Right-handed alpha
Helix 33
AD6
B
346 354Right-handed alpha
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There are 2 sheets in PDB entry 5EFD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
254 263parallel
Strand 3
A
305 310parallel
Strand 4
A
20 25parallel
Strand 5
A
44 47parallel
Strand 6
A
81 85parallel
Strand 7
A
143 148parallel
Strand 8
A
192 196parallel
Strand 9
A
224 227parallel
Strand 10
A
254 263parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
254 263parallel
Strand 3
B
305 310parallel
Strand 4
B
20 25parallel
Strand 5
B
44 47parallel
Strand 6
B
81 85parallel
Strand 7
B
143 148parallel
Strand 8
B
192 196parallel
Strand 9
B
224 227parallel
Strand 10
B
254 263parallel
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