Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EFO entry

There are 6 chains in PDB entry 5EFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 253
B
 MET 1LYS 253
C
 LYS 3LYS 253
D
 LYS 3LYS 253
E
 LYS 3LYS 253
F
 LYS 3VAL 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5EFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
28 35Right-handed alpha
Helix 3
AA3
A
69 83Right-handed alpha
Helix 4
AA4
A
117 122Right-handed 310
Helix 5
AA5
A
132 146Right-handed alpha
Helix 6
AA6
A
162 166Right-handed 310
Helix 7
AA7
A
176 180Right-handed 310
Helix 8
AA8
A
181 189Right-handed alpha
Helix 9
AA9
A
197 207Right-handed alpha
Helix 10
AB1
A
229 252Right-handed alpha
Helix 11
AB2
B
12 16Right-handed 310
Helix 12
AB3
B
28 35Right-handed alpha
Helix 13
AB4
B
69 83Right-handed alpha
Helix 14
AB5
B
117 122Right-handed 310
Helix 15
AB6
B
132 146Right-handed alpha
Helix 16
AB7
B
162 166Right-handed 310
Helix 17
AB8
B
176 180Right-handed 310
Helix 18
AB9
B
181 189Right-handed alpha
Helix 19
AC1
B
197 207Right-handed alpha
Helix 20
AC2
B
229 252Right-handed alpha
Helix 21
AC3
C
12 16Right-handed 310
Helix 22
AC4
C
26 28Right-handed 310
Helix 23
AC5
C
29 35Right-handed alpha
Helix 24
AC6
C
69 83Right-handed alpha
Helix 25
AC7
C
117 122Right-handed 310
Helix 26
AC8
C
132 146Right-handed alpha
Helix 27
AC9
C
162 166Right-handed 310
Helix 28
AD1
C
176 180Right-handed 310
Helix 29
AD2
C
181 189Right-handed alpha
Helix 30
AD3
C
197 207Right-handed alpha
Helix 31
AD4
C
229 252Right-handed alpha
Helix 32
AD5
D
12 16Right-handed 310
Helix 33
AD6
D
26 28Right-handed 310
Helix 34
AD7
D
29 35Right-handed alpha
Helix 35
AD8
D
69 83Right-handed alpha
Helix 36
AD9
D
117 122Right-handed 310
Helix 37
AE1
D
132 146Right-handed alpha
Helix 38
AE2
D
162 166Right-handed 310
Helix 39
AE3
D
176 180Right-handed 310
Helix 40
AE4
D
181 189Right-handed alpha
Helix 41
AE5
D
197 207Right-handed alpha
Helix 42
AE6
D
229 253Right-handed alpha
Helix 43
AE7
E
12 16Right-handed 310
Helix 44
AE8
E
26 28Right-handed 310
Helix 45
AE9
E
29 35Right-handed alpha
Helix 46
AF1
E
69 83Right-handed alpha
Helix 47
AF2
E
117 122Right-handed 310
Helix 48
AF3
E
132 146Right-handed alpha
Helix 49
AF4
E
162 166Right-handed 310
Helix 50
AF5
E
176 180Right-handed 310
Helix 51
AF6
E
181 189Right-handed alpha
Helix 52
AF7
E
197 207Right-handed alpha
Helix 53
AF8
E
232 252Right-handed alpha
Helix 54
AF9
F
12 16Right-handed 310
Helix 55
AG1
F
28 35Right-handed alpha
Helix 56
AG2
F
69 83Right-handed alpha
Helix 57
AG3
F
117 122Right-handed 310
Helix 58
AG4
F
132 146Right-handed alpha
Helix 59
AG5
F
162 166Right-handed 310
Helix 60
AG6
F
176 180Right-handed 310
Helix 61
AG7
F
181 189Right-handed alpha
Helix 62
AG8
F
197 207Right-handed alpha
Helix 63
AG9
F
229 252Right-handed alpha
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There are 6 sheets in PDB entry 5EFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 46first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
59 64anti-parallel
Strand 4
A
20 23parallel
Strand 5
A
87 96parallel
Strand 6
A
211 221parallel
Strand 7
A
106 115anti-parallel
Strand 8
A
150 158parallel
Strand 9
A
193 195parallel
Strand 10
A
87 96anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 46first strand
Strand 2
B
49 56anti-parallel
Strand 3
B
59 64anti-parallel
Strand 4
B
20 23parallel
Strand 5
B
87 96parallel
Strand 6
B
211 221parallel
Strand 7
B
106 115anti-parallel
Strand 8
B
150 158parallel
Strand 9
B
193 195parallel
Strand 10
B
87 96anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 46first strand
Strand 2
C
49 56anti-parallel
Strand 3
C
59 64anti-parallel
Strand 4
C
20 23parallel
Strand 5
C
87 96parallel
Strand 6
C
211 221parallel
Strand 7
C
106 115anti-parallel
Strand 8
C
150 158parallel
Strand 9
C
193 195parallel
Strand 10
C
87 96anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
38 46first strand
Strand 2
D
49 56anti-parallel
Strand 3
D
59 64anti-parallel
Strand 4
D
20 23parallel
Strand 5
D
87 96parallel
Strand 6
D
211 221parallel
Strand 7
D
106 115anti-parallel
Strand 8
D
150 158parallel
Strand 9
D
193 195parallel
Strand 10
D
87 96anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
38 46first strand
Strand 2
E
49 56anti-parallel
Strand 3
E
59 64anti-parallel
Strand 4
E
20 23parallel
Strand 5
E
87 96parallel
Strand 6
E
211 221parallel
Strand 7
E
106 115anti-parallel
Strand 8
E
150 158parallel
Strand 9
E
193 195parallel
Strand 10
E
87 96anti-parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
38 46first strand
Strand 2
F
49 56anti-parallel
Strand 3
F
59 64anti-parallel
Strand 4
F
20 23parallel
Strand 5
F
87 96parallel
Strand 6
F
211 221parallel
Strand 7
F
106 115anti-parallel
Strand 8
F
150 158parallel
Strand 9
F
193 195parallel
Strand 10
F
87 96anti-parallel
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