Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EFQ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 5EFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 695TYR 870
A
 ASN 872ARG 1025
B
 LYS 21LYS 262
C
 TRP 697TYR 870
C
 ASN 872MET 1031
D
 LYS 21SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 5EFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
701 703Right-handed 310
Helix 2
AA2
A
746 759Right-handed alpha
Helix 3
AA3
A
798 805Right-handed alpha
Helix 4
AA4
A
810 831Right-handed alpha
Helix 5
AA5
A
839 841Right-handed 310
Helix 6
AA6
A
855 859Right-handed 310
Helix 7
AA7
A
876 880Right-handed 310
Helix 8
AA8
A
881 886Right-handed alpha
Helix 9
AA9
A
893 909Right-handed alpha
Helix 10
AB1
A
918 931Right-handed alpha
Helix 11
AB2
A
938 944Right-handed 310
Helix 12
AB3
A
959 964Right-handed alpha
Helix 13
AB4
A
968 979Right-handed alpha
Helix 14
AB5
A
988 995Right-handed alpha
Helix 15
AB6
A
1002 1006Right-handed 310
Helix 16
AB7
A
1018 1025Right-handed alpha
Helix 17
AB8
B
27 32Right-handed alpha
Helix 18
AB9
B
34 39Right-handed alpha
Helix 19
AC1
B
42 64Right-handed alpha
Helix 20
AC2
B
67 82Right-handed alpha
Helix 21
AC3
B
91 107Right-handed alpha
Helix 22
AC4
B
112 124Right-handed alpha
Helix 23
AC5
B
125 130Right-handed alpha
Helix 24
AC6
B
131 133Right-handed 310
Helix 25
AC7
B
135 151Right-handed alpha
Helix 26
AC8
B
159 169Right-handed alpha
Helix 27
AC9
B
174 193Right-handed alpha
Helix 28
AD1
B
196 201Right-handed alpha
Helix 29
AD2
B
202 218Right-handed alpha
Helix 30
AD3
B
221 226Right-handed 310
Helix 31
AD4
B
233 238Right-handed 310
Helix 32
AD5
B
243 256Right-handed alpha
Helix 33
AD6
B
257 259Right-handed 310
Helix 34
AD7
C
701 703Right-handed 310
Helix 35
AD8
C
746 759Right-handed alpha
Helix 36
AD9
C
798 803Right-handed alpha
Helix 37
AE1
C
810 831Right-handed alpha
Helix 38
AE2
C
839 841Right-handed 310
Helix 39
AE3
C
855 859Right-handed 310
Helix 40
AE4
C
876 880Right-handed 310
Helix 41
AE5
C
881 886Right-handed alpha
Helix 42
AE6
C
893 909Right-handed alpha
Helix 43
AE7
C
918 931Right-handed alpha
Helix 44
AE8
C
938 944Right-handed 310
Helix 45
AE9
C
959 964Right-handed alpha
Helix 46
AF1
C
968 979Right-handed alpha
Helix 47
AF2
C
988 995Right-handed alpha
Helix 48
AF3
C
1002 1006Right-handed 310
Helix 49
AF4
C
1018 1031Right-handed alpha
Helix 50
AF5
D
27 32Right-handed alpha
Helix 51
AF6
D
34 39Right-handed alpha
Helix 52
AF7
D
42 64Right-handed alpha
Helix 53
AF8
D
67 82Right-handed alpha
Helix 54
AF9
D
91 107Right-handed alpha
Helix 55
AG1
D
112 124Right-handed alpha
Helix 56
AG2
D
125 130Right-handed alpha
Helix 57
AG3
D
131 133Right-handed 310
Helix 58
AG4
D
135 151Right-handed alpha
Helix 59
AG5
D
159 169Right-handed alpha
Helix 60
AG6
D
174 193Right-handed alpha
Helix 61
AG7
D
194 200Right-handed 310
Helix 62
AG8
D
202 218Right-handed alpha
Helix 63
AG9
D
221 226Right-handed 310
Helix 64
AH1
D
233 238Right-handed 310
Helix 65
AH2
D
243 256Right-handed alpha
Helix 66
AH3
D
257 259Right-handed 310
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There are 6 sheets in PDB entry 5EFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
705 713first strand
Strand 2
A
718 724anti-parallel
Strand 3
A
730 736anti-parallel
Strand 4
A
787 792anti-parallel
Strand 5
A
767 772anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
796 797first strand
Strand 2
A
843 845anti-parallel
Strand 3
A
851 853anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 834first strand
Strand 2
A
860 861anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
705 712first strand
Strand 2
C
719 724anti-parallel
Strand 3
C
730 736anti-parallel
Strand 4
C
787 792anti-parallel
Strand 5
C
767 772anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
796 797first strand
Strand 2
C
843 845anti-parallel
Strand 3
C
851 853anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
833 834first strand
Strand 2
C
860 861anti-parallel
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