Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EFR entry

There is 1 chain in PDB entry 5EFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 302GLU 1266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5EFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
317 326Right-handed alpha
Helix 2
AA2
A
334 344Right-handed alpha
Helix 3
AA3
A
350 357Right-handed alpha
Helix 4
AA4
A
403 409Right-handed alpha
Helix 5
AA5
A
420 435Right-handed alpha
Helix 6
AA6
A
438 445Right-handed alpha
Helix 7
AA7
A
1033 1047Right-handed alpha
Helix 8
AA8
A
1049 1061Right-handed alpha
Helix 9
AA9
A
1062 1064Right-handed 310
Helix 10
AB1
A
1069 1084Right-handed alpha
Helix 11
AB2
A
1086 1101Right-handed alpha
Helix 12
AB3
A
1106 1122Right-handed alpha
Helix 13
AB4
A
1129 1146Right-handed alpha
Helix 14
AB5
A
1151 1180Right-handed alpha
Helix 15
AB6
A
1182 1197Right-handed alpha
Helix 16
AB7
A
1201 1220Right-handed alpha
Helix 17
AB8
A
1222 1224Right-handed 310
Helix 18
AB9
A
1225 1244Right-handed alpha
Helix 19
AC1
A
1249 1266Right-handed alpha
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There are 2 sheets in PDB entry 5EFR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 311first strand
Strand 2
A
376 384parallel
Strand 3
A
364 371anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 397first strand
Strand 2
A
456 462parallel
Strand 3
A
447 451anti-parallel
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