Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EFT entry

There are 8 chains in PDB entry 5EFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 332	VAL 347
B	LEU 4	PHE 324
C	ALA 332	VAL 347
D	LEU 4	PHE 324
E	ALA 332	VAL 347
F	LEU 4	PHE 324
G	ALA 332	VAL 347
H	LEU 4	PHE 324

There are 52 helices in PDB entry 5EFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	51	61	Right-handed alpha
Helix 2	AA2	B	64	68	Right-handed 310
Helix 3	AA3	B	80	102	Right-handed alpha
Helix 4	AA4	B	176	176	Right-handed 310
Helix 5	AA5	B	178	181	Right-handed 310
Helix 6	AA6	B	182	210	Right-handed alpha
Helix 7	AA7	B	214	218	Right-handed 310
Helix 8	AA8	B	220	222	Right-handed 310
Helix 9	AA9	B	223	237	Right-handed alpha
Helix 10	AB1	B	247	256	Right-handed alpha
Helix 11	AB2	B	260	268	Right-handed alpha
Helix 12	AB3	B	269	271	Right-handed 310
Helix 13	AB4	B	275	286	Right-handed alpha
Helix 14	AB5	D	51	61	Right-handed alpha
Helix 15	AB6	D	64	68	Right-handed 310
Helix 16	AB7	D	80	102	Right-handed alpha
Helix 17	AB8	D	176	176	Right-handed 310
Helix 18	AB9	D	178	181	Right-handed 310
Helix 19	AC1	D	182	210	Right-handed alpha
Helix 20	AC2	D	214	218	Right-handed 310
Helix 21	AC3	D	220	222	Right-handed 310
Helix 22	AC4	D	223	237	Right-handed alpha
Helix 23	AC5	D	247	256	Right-handed alpha
Helix 24	AC6	D	260	268	Right-handed alpha
Helix 25	AC7	D	269	271	Right-handed 310
Helix 26	AC8	D	275	286	Right-handed alpha
Helix 27	AC9	F	51	61	Right-handed alpha
Helix 28	AD1	F	64	68	Right-handed 310
Helix 29	AD2	F	80	102	Right-handed alpha
Helix 30	AD3	F	176	176	Right-handed 310
Helix 31	AD4	F	178	181	Right-handed 310
Helix 32	AD5	F	182	210	Right-handed alpha
Helix 33	AD6	F	214	218	Right-handed 310
Helix 34	AD7	F	220	222	Right-handed 310
Helix 35	AD8	F	223	237	Right-handed alpha
Helix 36	AD9	F	247	256	Right-handed alpha
Helix 37	AE1	F	260	268	Right-handed alpha
Helix 38	AE2	F	269	271	Right-handed 310
Helix 39	AE3	F	275	286	Right-handed alpha
Helix 40	AE4	H	51	61	Right-handed alpha
Helix 41	AE5	H	64	68	Right-handed 310
Helix 42	AE6	H	80	102	Right-handed alpha
Helix 43	AE7	H	176	176	Right-handed 310
Helix 44	AE8	H	178	181	Right-handed 310
Helix 45	AE9	H	182	210	Right-handed alpha
Helix 46	AF1	H	214	218	Right-handed 310
Helix 47	AF2	H	220	222	Right-handed 310
Helix 48	AF3	H	223	237	Right-handed alpha
Helix 49	AF4	H	247	256	Right-handed alpha
Helix 50	AF5	H	260	268	Right-handed alpha
Helix 51	AF6	H	269	271	Right-handed 310
Helix 52	AF7	H	275	286	Right-handed alpha

There are 12 sheets in PDB entry 5EFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	45	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	168	first strand
Strand 2	B	122	129	anti-parallel
Strand 3	B	108	117	anti-parallel
Strand 4	B	319	322	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	304	306	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	17	first strand
Strand 2	D	45	49	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	168	first strand
Strand 2	D	122	129	anti-parallel
Strand 3	D	108	117	anti-parallel
Strand 4	D	319	322	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	304	306	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	17	first strand
Strand 2	F	45	49	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	168	first strand
Strand 2	F	122	129	anti-parallel
Strand 3	F	108	117	anti-parallel
Strand 4	F	319	322	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	290	first strand
Strand 2	F	304	306	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	17	first strand
Strand 2	H	45	49	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	162	168	first strand
Strand 2	H	122	129	anti-parallel
Strand 3	H	108	117	anti-parallel
Strand 4	H	319	322	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	290	first strand
Strand 2	H	304	306	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFT