Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EFV entry

There are 2 chains in PDB entry 5EFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	GLU 636
B	SER 2	HIS 612

There are 51 helices in PDB entry 5EFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	45	Right-handed alpha
Helix 2	AA2	A	66	83	Right-handed alpha
Helix 3	AA3	A	87	95	Right-handed alpha
Helix 4	AA4	A	106	142	Right-handed alpha
Helix 5	AA5	A	257	262	Right-handed alpha
Helix 6	AA6	A	284	288	Right-handed 310
Helix 7	AA7	A	302	306	Right-handed alpha
Helix 8	AA8	A	410	414	Right-handed 310
Helix 9	AA9	A	425	432	Right-handed alpha
Helix 10	AB1	A	456	460	Right-handed 310
Helix 11	AB2	A	469	473	Right-handed 310
Helix 12	AB3	A	482	486	Right-handed 310
Helix 13	AB4	A	527	531	Right-handed 310
Helix 14	AB5	A	553	557	Right-handed 310
Helix 15	AB6	A	569	573	Right-handed 310
Helix 16	AB7	A	578	582	Right-handed 310
Helix 17	AB8	B	14	45	Right-handed alpha
Helix 18	AB9	B	66	80	Right-handed alpha
Helix 19	AC1	B	88	95	Right-handed alpha
Helix 20	AC2	B	106	142	Right-handed alpha
Helix 21	AC3	B	257	262	Right-handed alpha
Helix 22	AC4	B	284	288	Right-handed 310
Helix 23	AC5	B	302	308	Right-handed alpha
Helix 24	AC6	B	319	323	Right-handed 310
Helix 25	AC7	B	380	382	Right-handed 310
Helix 26	AC8	B	410	414	Right-handed 310
Helix 27	AC9	B	425	433	Right-handed alpha
Helix 28	AD1	B	456	460	Right-handed 310
Helix 29	AD2	B	469	473	Right-handed 310
Helix 30	AD3	B	482	486	Right-handed 310
Helix 31	AD4	B	527	531	Right-handed 310
Helix 32	AD5	B	553	557	Right-handed 310
Helix 33	AD6	B	569	573	Right-handed 310
Helix 34	AD7	B	578	582	Right-handed 310
Helix 35	AD8	C	14	45	Right-handed alpha
Helix 36	AD9	C	66	84	Right-handed alpha
Helix 37	AE1	C	89	95	Right-handed alpha
Helix 38	AE2	C	106	142	Right-handed alpha
Helix 39	AE3	C	183	185	Right-handed 310
Helix 40	AE4	C	257	262	Right-handed alpha
Helix 41	AE5	C	284	292	Right-handed alpha
Helix 42	AE6	C	302	308	Right-handed alpha
Helix 43	AE7	C	319	323	Right-handed 310
Helix 44	AE8	C	425	432	Right-handed alpha
Helix 45	AE9	C	456	460	Right-handed 310
Helix 46	AF1	C	469	473	Right-handed 310
Helix 47	AF2	C	482	486	Right-handed 310
Helix 48	AF3	C	527	531	Right-handed 310
Helix 49	AF4	C	553	557	Right-handed 310
Helix 50	AF5	C	567	572	Right-handed alpha
Helix 51	AF6	C	578	582	Right-handed 310

There are 27 sheets in PDB entry 5EFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	B	55	59	parallel
Strand 3	B	62	65	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	55	59	anti-parallel
Strand 3	C	50	51	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	156	first strand
Strand 2	A	415	422	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	384	393	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	176	182	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	198	204	anti-parallel
Strand 5	A	245	247	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	218	first strand
Strand 2	A	221	229	anti-parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	254	255	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	271	first strand
Strand 2	A	276	282	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	314	318	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	335	first strand
Strand 2	A	338	343	anti-parallel
Strand 3	A	352	358	anti-parallel
Strand 4	A	364	370	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	468	first strand
Strand 2	A	490	496	anti-parallel
Strand 3	A	502	509	anti-parallel
Strand 4	A	518	524	anti-parallel
Strand 5	A	535	536	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	587	592	anti-parallel
Strand 3	A	598	605	anti-parallel
Strand 4	A	613	620	anti-parallel
Strand 5	A	623	624	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	566	first strand
Strand 2	A	587	592	anti-parallel
Strand 3	A	598	605	anti-parallel
Strand 4	A	613	620	anti-parallel
Strand 5	A	627	631	anti-parallel
Strand 6	B	633	635	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	613	620	anti-parallel
Strand 4	C	598	605	anti-parallel
Strand 5	C	587	592	anti-parallel
Strand 6	C	564	566	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	635	first strand
Strand 2	C	627	631	anti-parallel
Strand 3	C	613	620	anti-parallel
Strand 4	C	623	624	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	C	55	58	parallel
Strand 3	C	63	65	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	415	422	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	384	393	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	169	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	186	192	anti-parallel
Strand 4	B	198	204	anti-parallel
Strand 5	B	245	247	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	218	first strand
Strand 2	B	221	229	anti-parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	254	255	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	271	first strand
Strand 2	B	276	282	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	314	318	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	335	first strand
Strand 2	B	338	343	anti-parallel
Strand 3	B	353	358	anti-parallel
Strand 4	B	364	369	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	464	468	first strand
Strand 2	B	490	495	anti-parallel
Strand 3	B	502	509	anti-parallel
Strand 4	B	518	524	anti-parallel
Strand 5	B	535	536	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	587	592	anti-parallel
Strand 3	B	598	605	anti-parallel
Strand 4	B	613	620	anti-parallel
Strand 5	B	623	624	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	566	first strand
Strand 2	B	587	592	anti-parallel
Strand 3	B	598	605	anti-parallel
Strand 4	B	613	620	anti-parallel
Strand 5	B	627	631	anti-parallel
Strand 6	C	633	635	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	156	first strand
Strand 2	C	415	422	anti-parallel
Strand 3	C	400	408	anti-parallel
Strand 4	C	385	393	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	176	182	anti-parallel
Strand 3	C	186	192	anti-parallel
Strand 4	C	198	204	anti-parallel
Strand 5	C	245	247	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	218	first strand
Strand 2	C	221	229	anti-parallel
Strand 3	C	235	240	anti-parallel
Strand 4	C	254	255	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	271	first strand
Strand 2	C	276	282	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	314	317	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	335	first strand
Strand 2	C	338	343	anti-parallel
Strand 3	C	352	358	anti-parallel
Strand 4	C	364	370	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	464	468	first strand
Strand 2	C	490	496	anti-parallel
Strand 3	C	502	509	anti-parallel
Strand 4	C	518	524	anti-parallel
Strand 5	C	535	536	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFV