Analysis of interatomic Contacts of Structural Units in PDB entry:
5EFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EFZ entry

There are 4 chains in PDB entry 5EFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3TYR 349
B
 SER 3PRO 347
C
 HIS 10ALA 348
D
 ASN 2GLY 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are114 helices in PDB entry 5EFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 11Right-handed alpha
Helix 2
AA2
A
59 68Right-handed alpha
Helix 3
AA3
A
99 107Right-handed 310
Helix 4
AA4
A
111 126Right-handed alpha
Helix 5
AA5
A
139 152Right-handed alpha
Helix 6
AA6
A
169 185Right-handed alpha
Helix 7
AA7
A
186 193Right-handed 310
Helix 8
AA8
A
196 199Right-handed 310
Helix 9
AA9
A
200 216Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
224 229Right-handed alpha
Helix 12
AB3
A
233 241Right-handed alpha
Helix 13
AB4
A
241 247Right-handed alpha
Helix 14
AB5
A
250 263Right-handed alpha
Helix 15
AB6
A
264 271Right-handed 310
Helix 16
AB7
A
273 279Right-handed alpha
Helix 17
AB8
A
297 306Right-handed alpha
Helix 18
AB9
A
320 327Right-handed 310
Helix 19
AC1
A
329 345Right-handed alpha
Helix 20
AC2
B
6 11Right-handed alpha
Helix 21
AC3
B
59 68Right-handed alpha
Helix 22
AC4
B
99 107Right-handed 310
Helix 23
AC5
B
111 126Right-handed alpha
Helix 24
AC6
B
139 152Right-handed alpha
Helix 25
AC7
B
153 156Right-handed 310
Helix 26
AC8
B
169 185Right-handed alpha
Helix 27
AC9
B
186 193Right-handed 310
Helix 28
AD1
B
196 199Right-handed 310
Helix 29
AD2
B
200 216Right-handed alpha
Helix 30
AD3
B
217 223Right-handed alpha
Helix 31
AD4
B
224 229Right-handed alpha
Helix 32
AD5
B
233 241Right-handed alpha
Helix 33
AD6
B
241 247Right-handed alpha
Helix 34
AD7
B
250 263Right-handed alpha
Helix 35
AD8
B
264 270Right-handed 310
Helix 36
AD9
B
273 279Right-handed alpha
Helix 37
AE1
B
297 306Right-handed alpha
Helix 38
AE2
B
320 327Right-handed 310
Helix 39
AE3
B
329 346Right-handed alpha
Helix 40
AE4
C
59 68Right-handed alpha
Helix 41
AE5
C
99 107Right-handed 310
Helix 42
AE6
C
111 126Right-handed alpha
Helix 43
AE7
C
139 152Right-handed alpha
Helix 44
AE8
C
169 185Right-handed alpha
Helix 45
AE9
C
186 193Right-handed 310
Helix 46
AF1
C
197 199Right-handed 310
Helix 47
AF2
C
200 216Right-handed alpha
Helix 48
AF3
C
217 223Right-handed alpha
Helix 49
AF4
C
224 229Right-handed alpha
Helix 50
AF5
C
233 241Right-handed alpha
Helix 51
AF6
C
241 247Right-handed alpha
Helix 52
AF7
C
250 263Right-handed alpha
Helix 53
AF8
C
264 271Right-handed 310
Helix 54
AF9
C
273 280Right-handed alpha
Helix 55
AG1
C
297 306Right-handed alpha
Helix 56
AG2
C
320 327Right-handed 310
Helix 57
AG3
C
329 346Right-handed alpha
Helix 58
AG4
D
6 11Right-handed alpha
Helix 59
AG5
D
59 68Right-handed alpha
Helix 60
AG6
D
99 107Right-handed 310
Helix 61
AG7
D
111 126Right-handed alpha
Helix 62
AG8
D
139 152Right-handed alpha
Helix 63
AG9
D
169 185Right-handed alpha
Helix 64
AH1
D
186 193Right-handed 310
Helix 65
AH2
D
196 199Right-handed 310
Helix 66
AH3
D
200 216Right-handed alpha
Helix 67
AH4
D
217 223Right-handed alpha
Helix 68
AH5
D
224 229Right-handed alpha
Helix 69
AH6
D
233 241Right-handed alpha
Helix 70
AH7
D
241 247Right-handed alpha
Helix 71
AH8
D
250 263Right-handed alpha
Helix 72
AH9
D
264 271Right-handed 310
Helix 73
AI1
D
273 279Right-handed alpha
Helix 74
AI2
D
297 306Right-handed alpha
Helix 75
AI3
D
320 327Right-handed 310
Helix 76
AI4
D
329 345Right-handed alpha
Helix 77
AI5
E
6 11Right-handed alpha
Helix 78
AI6
E
59 68Right-handed alpha
Helix 79
AI7
E
99 107Right-handed 310
Helix 80
AI8
E
111 126Right-handed alpha
Helix 81
AI9
E
139 152Right-handed alpha
Helix 82
AJ1
E
169 185Right-handed alpha
Helix 83
AJ2
E
189 193Right-handed 310
Helix 84
AJ3
E
196 199Right-handed 310
Helix 85
AJ4
E
200 216Right-handed alpha
Helix 86
AJ5
E
217 223Right-handed alpha
Helix 87
AJ6
E
224 229Right-handed alpha
Helix 88
AJ7
E
233 241Right-handed alpha
Helix 89
AJ8
E
241 247Right-handed alpha
Helix 90
AJ9
E
250 264Right-handed alpha
Helix 91
AK1
E
265 271Right-handed 310
Helix 92
AK2
E
273 280Right-handed alpha
Helix 93
AK3
E
297 306Right-handed alpha
Helix 94
AK4
E
320 327Right-handed 310
Helix 95
AK5
E
329 345Right-handed alpha
Helix 96
AK6
F
6 11Right-handed alpha
Helix 97
AK7
F
59 68Right-handed alpha
Helix 98
AK8
F
99 107Right-handed 310
Helix 99
AK9
F
111 126Right-handed alpha
Helix 100
AL1
F
139 152Right-handed alpha
Helix 101
AL2
F
169 185Right-handed alpha
Helix 102
AL3
F
186 193Right-handed 310
Helix 103
AL4
F
196 199Right-handed 310
Helix 104
AL5
F
200 216Right-handed alpha
Helix 105
AL6
F
217 223Right-handed alpha
Helix 106
AL7
F
224 229Right-handed alpha
Helix 107
AL8
F
233 241Right-handed alpha
Helix 108
AL9
F
241 247Right-handed alpha
Helix 109
AM1
F
250 263Right-handed alpha
Helix 110
AM2
F
264 271Right-handed 310
Helix 111
AM3
F
273 279Right-handed alpha
Helix 112
AM4
F
297 306Right-handed alpha
Helix 113
AM5
F
320 327Right-handed 310
Helix 114
AM6
F
329 345Right-handed alpha
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There are 12 sheets in PDB entry 5EFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
80 84anti-parallel
Strand 4
A
49 53parallel
Strand 5
A
134 138parallel
Strand 6
A
158 162parallel
Strand 7
A
284 288parallel
Strand 8
A
312 313parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 22first strand
Strand 2
A
28 29anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 17first strand
Strand 2
B
33 39anti-parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
49 53parallel
Strand 5
B
134 138parallel
Strand 6
B
158 162parallel
Strand 7
B
284 288parallel
Strand 8
B
312 313parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 22first strand
Strand 2
B
28 29anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
14 17first strand
Strand 2
C
33 39anti-parallel
Strand 3
C
80 84anti-parallel
Strand 4
C
49 53parallel
Strand 5
C
134 138parallel
Strand 6
C
158 162parallel
Strand 7
C
284 288parallel
Strand 8
C
312 313parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 22first strand
Strand 2
C
28 29anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 17first strand
Strand 2
D
33 39anti-parallel
Strand 3
D
80 84anti-parallel
Strand 4
D
49 53parallel
Strand 5
D
134 138parallel
Strand 6
D
158 162parallel
Strand 7
D
284 288parallel
Strand 8
D
312 313parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 22first strand
Strand 2
D
28 29anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 17first strand
Strand 2
E
33 39anti-parallel
Strand 3
E
80 84anti-parallel
Strand 4
E
49 53parallel
Strand 5
E
134 138parallel
Strand 6
E
158 162parallel
Strand 7
E
284 288parallel
Strand 8
E
312 313parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 22first strand
Strand 2
E
28 29anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
14 17first strand
Strand 2
F
33 39anti-parallel
Strand 3
F
80 84anti-parallel
Strand 4
F
49 53parallel
Strand 5
F
134 138parallel
Strand 6
F
158 162parallel
Strand 7
F
284 288parallel
Strand 8
F
312 313parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
21 22first strand
Strand 2
F
28 29anti-parallel
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