Analysis of interatomic Contacts of Structural Units in PDB entry:
5EG3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EG3 entry

There are 3 chains in PDB entry 5EG3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 466GLU 768
A
 LEU 770GLN 774
B
 MET 660GLY 772
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5EG3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
524 542Right-handed alpha
Helix 2
AA2
A
571 578Right-handed alpha
Helix 3
AA3
A
593 597Right-handed 310
Helix 4
AA4
A
599 620Right-handed alpha
Helix 5
AA5
A
628 630Right-handed 310
Helix 6
AA6
A
666 670Right-handed 310
Helix 7
AA7
A
671 678Right-handed alpha
Helix 8
AA8
A
681 698Right-handed alpha
Helix 9
AA9
A
708 718Right-handed alpha
Helix 10
AB1
A
729 740Right-handed alpha
Helix 11
AB2
A
743 747Right-handed 310
Helix 12
AB3
A
749 768Right-handed alpha
Helix 13
AB4
B
660 666Right-handed 310
Helix 14
AB5
B
674 683Right-handed alpha
Helix 15
AB6
B
733 744Right-handed alpha
Helix 16
AB7
B
760 765Right-handed alpha
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There are 6 sheets in PDB entry 5EG3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
481 489first strand
Strand 2
A
493 501anti-parallel
Strand 3
A
511 519anti-parallel
Strand 4
A
561 565anti-parallel
Strand 5
A
550 554anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
649 650anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 634first strand
Strand 2
A
640 642anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
657 658first strand
Strand 2
A
679 680anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
669 670first strand
Strand 2
B
690 695parallel
Strand 3
B
701 708anti-parallel
Strand 4
B
711 720anti-parallel
Strand 5
B
723 726anti-parallel
Strand 6
B
729 731anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
669 670first strand
Strand 2
B
690 695parallel
Strand 3
B
754 755parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il