Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EGP entry

There are 2 chains in PDB entry 5EGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 6PRO 287
B
 ILE 7PRO 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5EGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 12Right-handed 310
Helix 2
AA2
A
13 28Right-handed alpha
Helix 3
AA3
A
30 39Right-handed alpha
Helix 4
AA4
A
58 68Right-handed alpha
Helix 5
AA5
A
69 76Right-handed alpha
Helix 6
AA6
A
84 99Right-handed alpha
Helix 7
AA7
A
134 145Right-handed alpha
Helix 8
AA8
A
161 171Right-handed alpha
Helix 9
AA9
A
181 187Right-handed alpha
Helix 10
AB1
A
195 207Right-handed alpha
Helix 11
AB2
A
224 243Right-handed alpha
Helix 12
AB3
A
244 252Right-handed alpha
Helix 13
AB4
A
254 268Right-handed alpha
Helix 14
AB5
B
9 12Right-handed 310
Helix 15
AB6
B
13 28Right-handed alpha
Helix 16
AB7
B
30 39Right-handed alpha
Helix 17
AB8
B
40 43Right-handed 310
Helix 18
AB9
B
58 68Right-handed alpha
Helix 19
AC1
B
69 76Right-handed alpha
Helix 20
AC2
B
84 98Right-handed alpha
Helix 21
AC3
B
134 145Right-handed alpha
Helix 22
AC4
B
161 172Right-handed alpha
Helix 23
AC5
B
181 187Right-handed alpha
Helix 24
AC6
B
195 207Right-handed alpha
Helix 25
AC7
B
224 243Right-handed alpha
Helix 26
AC8
B
244 252Right-handed alpha
Helix 27
AC9
B
254 268Right-handed alpha
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There are 2 sheets in PDB entry 5EGP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
77 82parallel
Strand 3
A
49 53parallel
Strand 4
A
120 126parallel
Strand 5
A
146 160parallel
Strand 6
A
272 285anti-parallel
Strand 7
A
209 223anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
77 82parallel
Strand 3
B
49 53parallel
Strand 4
B
120 126parallel
Strand 5
B
146 160parallel
Strand 6
B
272 285anti-parallel
Strand 7
B
209 223anti-parallel
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