Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EGS entry

There are 4 chains in PDB entry 5EGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 39	ASP 375
B	ARG 38	ASP 375
C	THR 39	ASP 375
D	ARG 38	ILE 290

There are 50 helices in PDB entry 5EGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	50	Right-handed alpha
Helix 2	AA2	A	53	63	Right-handed alpha
Helix 3	AA3	A	63	77	Right-handed alpha
Helix 4	AA4	A	77	82	Right-handed alpha
Helix 5	AA5	A	94	103	Right-handed alpha
Helix 6	AA6	A	116	127	Right-handed alpha
Helix 7	AA7	A	165	177	Right-handed alpha
Helix 8	AA8	A	198	216	Right-handed alpha
Helix 9	AA9	A	219	221	Right-handed 310
Helix 10	AB1	A	222	232	Right-handed alpha
Helix 11	AB2	A	242	246	Right-handed 310
Helix 12	AB3	A	262	270	Right-handed alpha
Helix 13	AB4	B	39	51	Right-handed alpha
Helix 14	AB5	B	53	63	Right-handed alpha
Helix 15	AB6	B	63	76	Right-handed alpha
Helix 16	AB7	B	77	82	Right-handed alpha
Helix 17	AB8	B	94	103	Right-handed alpha
Helix 18	AB9	B	116	127	Right-handed alpha
Helix 19	AC1	B	165	177	Right-handed alpha
Helix 20	AC2	B	198	207	Right-handed alpha
Helix 21	AC3	B	210	216	Right-handed alpha
Helix 22	AC4	B	219	221	Right-handed 310
Helix 23	AC5	B	222	232	Right-handed alpha
Helix 24	AC6	B	242	246	Right-handed 310
Helix 25	AC7	B	262	270	Right-handed alpha
Helix 26	AC8	C	40	51	Right-handed alpha
Helix 27	AC9	C	53	63	Right-handed alpha
Helix 28	AD1	C	63	77	Right-handed alpha
Helix 29	AD2	C	77	82	Right-handed alpha
Helix 30	AD3	C	94	104	Right-handed alpha
Helix 31	AD4	C	116	127	Right-handed alpha
Helix 32	AD5	C	165	177	Right-handed alpha
Helix 33	AD6	C	198	216	Right-handed alpha
Helix 34	AD7	C	219	221	Right-handed 310
Helix 35	AD8	C	222	232	Right-handed alpha
Helix 36	AD9	C	242	246	Right-handed 310
Helix 37	AE1	C	262	267	Right-handed alpha
Helix 38	AE2	C	268	270	Right-handed 310
Helix 39	AE3	D	39	51	Right-handed alpha
Helix 40	AE4	D	53	63	Right-handed alpha
Helix 41	AE5	D	63	76	Right-handed alpha
Helix 42	AE6	D	77	82	Right-handed alpha
Helix 43	AE7	D	94	103	Right-handed alpha
Helix 44	AE8	D	116	127	Right-handed alpha
Helix 45	AE9	D	165	177	Right-handed alpha
Helix 46	AF1	D	198	216	Right-handed alpha
Helix 47	AF2	D	219	221	Right-handed 310
Helix 48	AF3	D	222	231	Right-handed alpha
Helix 49	AF4	D	242	246	Right-handed 310
Helix 50	AF5	D	262	270	Right-handed alpha

There are 12 sheets in PDB entry 5EGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	107	112	parallel
Strand 3	A	85	89	parallel
Strand 4	A	149	153	parallel
Strand 5	A	178	185	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	257	first strand
Strand 2	A	188	196	anti-parallel
Strand 3	A	283	296	anti-parallel
Strand 4	A	320	331	anti-parallel
Strand 5	A	235	239	anti-parallel
Strand 6	A	367	373	parallel
Strand 7	A	353	361	anti-parallel
Strand 8	A	336	345	anti-parallel
Strand 9	A	271	278	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	257	first strand
Strand 2	A	188	196	anti-parallel
Strand 3	A	283	296	anti-parallel
Strand 4	A	305	308	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	137	first strand
Strand 2	B	107	112	parallel
Strand 3	B	85	89	parallel
Strand 4	B	149	153	parallel
Strand 5	B	178	185	parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	257	first strand
Strand 2	B	188	196	anti-parallel
Strand 3	B	283	296	anti-parallel
Strand 4	B	320	331	anti-parallel
Strand 5	B	235	239	anti-parallel
Strand 6	B	367	373	parallel
Strand 7	B	353	361	anti-parallel
Strand 8	B	336	345	anti-parallel
Strand 9	B	271	278	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	257	first strand
Strand 2	B	188	196	anti-parallel
Strand 3	B	283	296	anti-parallel
Strand 4	B	305	308	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	107	112	parallel
Strand 3	C	85	89	parallel
Strand 4	C	149	153	parallel
Strand 5	C	178	185	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	257	first strand
Strand 2	C	188	196	anti-parallel
Strand 3	C	283	296	anti-parallel
Strand 4	C	320	331	anti-parallel
Strand 5	C	235	239	anti-parallel
Strand 6	C	367	373	parallel
Strand 7	C	353	361	anti-parallel
Strand 8	C	336	345	anti-parallel
Strand 9	C	271	278	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	257	first strand
Strand 2	C	188	196	anti-parallel
Strand 3	C	283	296	anti-parallel
Strand 4	C	305	308	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	D	107	112	parallel
Strand 3	D	85	89	parallel
Strand 4	D	149	153	parallel
Strand 5	D	178	185	parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	257	first strand
Strand 2	D	188	196	anti-parallel
Strand 3	D	283	296	anti-parallel
Strand 4	D	320	331	anti-parallel
Strand 5	D	235	239	anti-parallel
Strand 6	D	367	373	parallel
Strand 7	D	353	361	anti-parallel
Strand 8	D	336	345	anti-parallel
Strand 9	D	271	278	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	257	first strand
Strand 2	D	188	196	anti-parallel
Strand 3	D	283	296	anti-parallel
Strand 4	D	305	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EGS