Analysis of interatomic Contacts of Structural Units in PDB entry:
5EHM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EHM entry

There are 2 chains in PDB entry 5EHM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3GLY 263
B
 LYS 8GLY 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5EHM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
38 52Right-handed alpha
Helix 3
AA3
A
76 84Right-handed alpha
Helix 4
AA4
A
97 102Right-handed alpha
Helix 5
AA5
A
127 133Right-handed alpha
Helix 6
AA6
A
145 154Right-handed alpha
Helix 7
AA7
A
156 169Right-handed alpha
Helix 8
AA8
A
177 189Right-handed alpha
Helix 9
AA9
A
198 206Right-handed alpha
Helix 10
AB1
A
233 247Right-handed alpha
Helix 11
AB2
A
248 260Right-handed alpha
Helix 12
AB3
B
31 34Right-handed 310
Helix 13
AB4
B
38 52Right-handed alpha
Helix 14
AB5
B
76 84Right-handed alpha
Helix 15
AB6
B
97 102Right-handed alpha
Helix 16
AB7
B
127 133Right-handed alpha
Helix 17
AB8
B
145 154Right-handed alpha
Helix 18
AB9
B
156 169Right-handed alpha
Helix 19
AC1
B
177 187Right-handed alpha
Helix 20
AC2
B
198 206Right-handed alpha
Helix 21
AC3
B
233 247Right-handed alpha
Helix 22
AC4
B
248 260Right-handed alpha
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There are 10 sheets in PDB entry 5EHM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 59first strand
Strand 2
A
9 14parallel
Strand 3
A
89 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
36 37anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 106first strand
Strand 2
A
226 227anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 113first strand
Strand 2
A
221 223anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
192 197parallel
Strand 3
A
115 120anti-parallel
Strand 4
A
211 214anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 59first strand
Strand 2
B
9 14parallel
Strand 3
B
89 90parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
36 37anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
226 227anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 113first strand
Strand 2
B
221 223anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
192 197parallel
Strand 3
B
115 120anti-parallel
Strand 4
B
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il