Analysis of interatomic Contacts of Structural Units in PDB entry:
5EIO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EIO entry

There are 3 chains in PDB entry 5EIO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 344
B
 LYS 3PRO 344
C
 MET 1PRO 46
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5EIO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
61 65Right-handed 310
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
83 89Right-handed alpha
Helix 7
AA7
A
105 114Right-handed alpha
Helix 8
AA8
A
118 122Right-handed 310
Helix 9
AA9
A
129 139Right-handed alpha
Helix 10
AB1
A
147 164Right-handed alpha
Helix 11
AB2
A
178 183Right-handed 310
Helix 12
AB3
A
187 190Right-handed 310
Helix 13
AB4
A
191 196Right-handed alpha
Helix 14
AB5
A
208 216Right-handed alpha
Helix 15
AB6
A
249 262Right-handed alpha
Helix 16
AB7
A
281 286Right-handed alpha
Helix 17
AB8
A
317 330Right-handed alpha
Helix 18
AB9
B
13 25Right-handed alpha
Helix 19
AC1
B
43 47Right-handed 310
Helix 20
AC2
B
48 52Right-handed 310
Helix 21
AC3
B
61 65Right-handed 310
Helix 22
AC4
B
78 83Right-handed alpha
Helix 23
AC5
B
83 89Right-handed alpha
Helix 24
AC6
B
105 114Right-handed alpha
Helix 25
AC7
B
118 122Right-handed 310
Helix 26
AC8
B
129 139Right-handed alpha
Helix 27
AC9
B
147 163Right-handed alpha
Helix 28
AD1
B
178 183Right-handed 310
Helix 29
AD2
B
187 190Right-handed 310
Helix 30
AD3
B
191 196Right-handed alpha
Helix 31
AD4
B
209 216Right-handed alpha
Helix 32
AD5
B
249 262Right-handed alpha
Helix 33
AD6
B
281 286Right-handed alpha
Helix 34
AD7
B
317 330Right-handed alpha
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There are 6 sheets in PDB entry 5EIO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
4 9parallel
Strand 3
A
70 73parallel
Strand 4
A
93 96parallel
Strand 5
A
142 144parallel
Strand 6
A
126 127parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
223 229anti-parallel
Strand 3
A
171 177parallel
Strand 4
A
236 243anti-parallel
Strand 5
A
303 310anti-parallel
Strand 6
A
291 297anti-parallel
Strand 7
A
267 269parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 34first strand
Strand 2
B
4 9parallel
Strand 3
B
70 73parallel
Strand 4
B
93 96parallel
Strand 5
B
142 145parallel
Strand 6
B
126 128parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
223 229anti-parallel
Strand 3
B
171 177parallel
Strand 4
B
236 243anti-parallel
Strand 5
B
303 310anti-parallel
Strand 6
B
291 297anti-parallel
Strand 7
B
267 269parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
11 13anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
31 36anti-parallel
Strand 3
C
41 44anti-parallel
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