Analysis of interatomic Contacts of Structural Units in PDB entry:
5EIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EIR entry

There are 2 chains in PDB entry 5EIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28VAL 217
B
 LYS 621PHE 634
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5EIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 34Right-handed 310
Helix 2
AA2
A
55 59Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
104 109Right-handed alpha
Helix 5
AA5
A
120 125Right-handed alpha
Helix 6
AA6
A
125 139Right-handed alpha
Helix 7
AA7
A
142 147Right-handed 310
Helix 8
AA8
A
172 188Right-handed alpha
Helix 9
AA9
A
200 204Right-handed alpha
Helix 10
AB1
B
625 630Right-handed alpha
Helix 11
AB2
B
631 633Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5EIR.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 68first strand
Strand 2
A
38 48anti-parallel
Strand 3
A
89 95anti-parallel
Strand 4
A
149 156anti-parallel
Strand 5
A
162 167anti-parallel
Strand 6
A
111 116anti-parallel
Strand 7
A
195 199anti-parallel
Strand 8
A
215 217anti-parallel
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