Analysis of interatomic Contacts of Structural Units in PDB entry:
5EIV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EIV entry

There are 44 chains in PDB entry 5EIV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5ALA 192
B
 TYR 4ALA 191
C
 GLY -5PRO -4
C
 GLY -2PRO -1
C
 GLY 1PRO 2
C
 GLY 4PHE 8
C
 GLY 10PRO 11
C
 GLY 13PRO 14
D
 PRO -4PRO -4
D
 GLY -2PRO -1
D
 GLY 1PRO 2
D
 GLY 4PHE 8
D
 GLY 10PRO 11
D
 GLY 13PRO 14
E
 GLY -5PRO -4
E
 GLY -2PRO -1
E
 GLY 1PRO 2
E
 GLY 4PHE 8
E
 GLY 10PRO 11
E
 GLY 13PRO 14
F
 GLY -5PRO -4
F
 GLY -2PRO -1
F
 GLY 1PRO 2
F
 GLY 4PHE 8
F
 GLY 10PRO 11
F
 GLY 13PRO 14
G
 PRO -4PRO -4
G
 GLY -2PRO -1
G
 GLY 1PRO 2
G
 GLY 4PHE 8
G
 GLY 10PRO 11
G
 GLY 13PRO 14
H
 GLY -5PRO -4
H
 GLY -2PRO -1
H
 GLY 1PRO 2
H
 GLY 4PHE 8
H
 GLY 10PRO 11
H
 GLY 13PRO 14
I
 GLY -5PRO -4
I
 GLY -2PRO -1
J
 GLY -2PRO -1
J
 GLY 1PRO 2
K
 GLY -5PRO -4
K
 GLY -2PRO -1
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5EIV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 70Right-handed 310
Helix 2
AA2
A
79 83Right-handed 310
Helix 3
AA3
B
66 70Right-handed 310
Helix 4
AA4
B
79 83Right-handed 310
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There are 9 sheets in PDB entry 5EIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
57 62anti-parallel
Strand 4
A
51 54anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
94 98parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
36 40anti-parallel
Strand 5
A
48 49anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
181 182parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
121 126anti-parallel
Strand 3
A
154 159anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
132 138anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
A
188 190anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
57 62anti-parallel
Strand 4
B
51 52anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 18first strand
Strand 2
B
94 98parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
36 40anti-parallel
Strand 5
B
48 49anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 109first strand
Strand 2
B
121 126anti-parallel
Strand 3
B
154 159anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 149first strand
Strand 2
B
133 138anti-parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
188 190anti-parallel
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