Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJ5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EJ5 entry

There are 8 chains in PDB entry 5EJ5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1LEU 556
B
MET 1LEU 556
C
MET 1LEU 556
D
MET 1LEU 556
E
MET 1LEU 556
F
MET 1LEU 556
G
MET 1LEU 556
H
MET 1LEU 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are218 helices in PDB entry 5EJ5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 19Right-handed alpha
Helix 2
AA2
A
20 22Right-handed 310
Helix 3
AA3
A
34 44Right-handed alpha
Helix 4
AA4
A
54 70Right-handed alpha
Helix 5
AA5
A
80 85Right-handed alpha
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
108 112Right-handed 310
Helix 8
AA8
A
144 158Right-handed alpha
Helix 9
AA9
A
182 188Right-handed alpha
Helix 10
AB1
A
189 195Right-handed 310
Helix 11
AB2
A
213 218Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
262 267Right-handed alpha
Helix 14
AB5
A
269 277Right-handed alpha
Helix 15
AB6
A
291 301Right-handed alpha
Helix 16
AB7
A
329 337Right-handed alpha
Helix 17
AB8
A
347 362Right-handed alpha
Helix 18
AB9
A
368 376Right-handed alpha
Helix 19
AC1
A
377 380Right-handed 310
Helix 20
AC2
A
391 401Right-handed alpha
Helix 21
AC3
A
420 433Right-handed alpha
Helix 22
AC4
A
442 448Right-handed alpha
Helix 23
AC5
A
449 457Right-handed 310
Helix 24
AC6
A
473 478Right-handed alpha
Helix 25
AC7
A
481 489Right-handed alpha
Helix 26
AC8
A
497 504Right-handed alpha
Helix 27
AC9
A
513 525Right-handed alpha
Helix 28
AD1
A
540 555Right-handed alpha
Helix 29
AD2
B
2 19Right-handed alpha
Helix 30
AD3
B
20 22Right-handed 310
Helix 31
AD4
B
34 44Right-handed alpha
Helix 32
AD5
B
54 70Right-handed alpha
Helix 33
AD6
B
80 85Right-handed alpha
Helix 34
AD7
B
86 97Right-handed alpha
Helix 35
AD8
B
108 112Right-handed 310
Helix 36
AD9
B
144 158Right-handed alpha
Helix 37
AE1
B
182 188Right-handed alpha
Helix 38
AE2
B
189 195Right-handed 310
Helix 39
AE3
B
213 218Right-handed alpha
Helix 40
AE4
B
230 245Right-handed alpha
Helix 41
AE5
B
262 267Right-handed alpha
Helix 42
AE6
B
269 277Right-handed alpha
Helix 43
AE7
B
291 301Right-handed alpha
Helix 44
AE8
B
329 337Right-handed alpha
Helix 45
AE9
B
347 362Right-handed alpha
Helix 46
AF1
B
368 376Right-handed alpha
Helix 47
AF2
B
377 379Right-handed 310
Helix 48
AF3
B
391 401Right-handed alpha
Helix 49
AF4
B
420 433Right-handed alpha
Helix 50
AF5
B
442 448Right-handed alpha
Helix 51
AF6
B
449 457Right-handed 310
Helix 52
AF7
B
473 478Right-handed alpha
Helix 53
AF8
B
481 489Right-handed alpha
Helix 54
AF9
B
497 504Right-handed alpha
Helix 55
AG1
B
513 525Right-handed alpha
Helix 56
AG2
B
540 555Right-handed alpha
Helix 57
AG3
C
2 20Right-handed alpha
Helix 58
AG4
C
34 44Right-handed alpha
Helix 59
AG5
C
54 70Right-handed alpha
Helix 60
AG6
C
80 85Right-handed alpha
Helix 61
AG7
C
86 97Right-handed alpha
Helix 62
AG8
C
108 112Right-handed 310
Helix 63
AG9
C
144 158Right-handed alpha
Helix 64
AH1
C
182 188Right-handed alpha
Helix 65
AH2
C
189 195Right-handed 310
Helix 66
AH3
C
213 218Right-handed alpha
Helix 67
AH4
C
230 245Right-handed alpha
Helix 68
AH5
C
262 267Right-handed alpha
Helix 69
AH6
C
269 277Right-handed alpha
Helix 70
AH7
C
291 301Right-handed alpha
Helix 71
AH8
C
329 337Right-handed alpha
Helix 72
AH9
C
347 362Right-handed alpha
Helix 73
AI1
C
368 375Right-handed alpha
Helix 74
AI2
C
376 380Right-handed 310
Helix 75
AI3
C
391 401Right-handed alpha
Helix 76
AI4
C
420 433Right-handed alpha
Helix 77
AI5
C
442 448Right-handed alpha
Helix 78
AI6
C
449 457Right-handed 310
Helix 79
AI7
C
473 478Right-handed alpha
Helix 80
AI8
C
481 489Right-handed alpha
Helix 81
AI9
C
497 504Right-handed alpha
Helix 82
AJ1
C
513 525Right-handed alpha
Helix 83
AJ2
C
540 555Right-handed alpha
Helix 84
AJ3
D
2 20Right-handed alpha
Helix 85
AJ4
D
34 44Right-handed alpha
Helix 86
AJ5
D
54 70Right-handed alpha
Helix 87
AJ6
D
80 85Right-handed alpha
Helix 88
AJ7
D
86 97Right-handed alpha
Helix 89
AJ8
D
108 112Right-handed 310
Helix 90
AJ9
D
144 158Right-handed alpha
Helix 91
AK1
D
182 188Right-handed alpha
Helix 92
AK2
D
189 195Right-handed 310
Helix 93
AK3
D
213 218Right-handed alpha
Helix 94
AK4
D
230 245Right-handed alpha
Helix 95
AK5
D
262 267Right-handed alpha
Helix 96
AK6
D
269 277Right-handed alpha
Helix 97
AK7
D
291 301Right-handed alpha
Helix 98
AK8
D
329 337Right-handed alpha
Helix 99
AK9
D
348 362Right-handed alpha
Helix 100
AL1
D
368 376Right-handed alpha
Helix 101
AL2
D
377 380Right-handed 310
Helix 102
AL3
D
391 401Right-handed alpha
Helix 103
AL4
D
420 433Right-handed alpha
Helix 104
AL5
D
442 448Right-handed alpha
Helix 105
AL6
D
449 457Right-handed 310
Helix 106
AL7
D
473 478Right-handed alpha
Helix 107
AL8
D
481 489Right-handed alpha
Helix 108
AL9
D
497 504Right-handed alpha
Helix 109
AM1
D
513 525Right-handed alpha
Helix 110
AM2
D
540 555Right-handed alpha
Helix 111
AM3
E
2 20Right-handed alpha
Helix 112
AM4
E
34 44Right-handed alpha
Helix 113
AM5
E
54 70Right-handed alpha
Helix 114
AM6
E
80 85Right-handed alpha
Helix 115
AM7
E
86 97Right-handed alpha
Helix 116
AM8
E
108 112Right-handed 310
Helix 117
AM9
E
144 158Right-handed alpha
Helix 118
AN1
E
182 188Right-handed alpha
Helix 119
AN2
E
189 195Right-handed 310
Helix 120
AN3
E
213 218Right-handed alpha
Helix 121
AN4
E
230 245Right-handed alpha
Helix 122
AN5
E
262 267Right-handed alpha
Helix 123
AN6
E
269 277Right-handed alpha
Helix 124
AN7
E
291 301Right-handed alpha
Helix 125
AN8
E
329 337Right-handed alpha
Helix 126
AN9
E
347 362Right-handed alpha
Helix 127
AO1
E
368 375Right-handed alpha
Helix 128
AO2
E
376 380Right-handed 310
Helix 129
AO3
E
391 401Right-handed alpha
Helix 130
AO4
E
420 433Right-handed alpha
Helix 131
AO5
E
442 448Right-handed alpha
Helix 132
AO6
E
449 457Right-handed 310
Helix 133
AO7
E
473 478Right-handed alpha
Helix 134
AO8
E
481 489Right-handed alpha
Helix 135
AO9
E
497 504Right-handed alpha
Helix 136
AP1
E
513 525Right-handed alpha
Helix 137
AP2
E
540 555Right-handed alpha
Helix 138
AP3
F
2 20Right-handed alpha
Helix 139
AP4
F
34 44Right-handed alpha
Helix 140
AP5
F
54 70Right-handed alpha
Helix 141
AP6
F
80 85Right-handed alpha
Helix 142
AP7
F
86 97Right-handed alpha
Helix 143
AP8
F
108 112Right-handed 310
Helix 144
AP9
F
144 158Right-handed alpha
Helix 145
AQ1
F
182 188Right-handed alpha
Helix 146
AQ2
F
189 195Right-handed 310
Helix 147
AQ3
F
213 218Right-handed alpha
Helix 148
AQ4
F
230 245Right-handed alpha
Helix 149
AQ5
F
262 267Right-handed alpha
Helix 150
AQ6
F
269 277Right-handed alpha
Helix 151
AQ7
F
291 301Right-handed alpha
Helix 152
AQ8
F
329 337Right-handed alpha
Helix 153
AQ9
F
347 362Right-handed alpha
Helix 154
AR1
F
368 375Right-handed alpha
Helix 155
AR2
F
376 380Right-handed 310
Helix 156
AR3
F
391 401Right-handed alpha
Helix 157
AR4
F
420 433Right-handed alpha
Helix 158
AR5
F
442 448Right-handed alpha
Helix 159
AR6
F
449 457Right-handed 310
Helix 160
AR7
F
473 478Right-handed alpha
Helix 161
AR8
F
481 489Right-handed alpha
Helix 162
AR9
F
497 504Right-handed alpha
Helix 163
AS1
F
513 525Right-handed alpha
Helix 164
AS2
F
540 555Right-handed alpha
Helix 165
AS3
G
2 20Right-handed alpha
Helix 166
AS4
G
34 44Right-handed alpha
Helix 167
AS5
G
54 70Right-handed alpha
Helix 168
AS6
G
80 85Right-handed alpha
Helix 169
AS7
G
86 97Right-handed alpha
Helix 170
AS8
G
108 112Right-handed 310
Helix 171
AS9
G
144 158Right-handed alpha
Helix 172
AT1
G
182 188Right-handed alpha
Helix 173
AT2
G
189 195Right-handed 310
Helix 174
AT3
G
213 218Right-handed alpha
Helix 175
AT4
G
230 245Right-handed alpha
Helix 176
AT5
G
262 267Right-handed alpha
Helix 177
AT6
G
269 277Right-handed alpha
Helix 178
AT7
G
291 301Right-handed alpha
Helix 179
AT8
G
329 337Right-handed alpha
Helix 180
AT9
G
348 362Right-handed alpha
Helix 181
AU1
G
368 376Right-handed alpha
Helix 182
AU2
G
377 379Right-handed 310
Helix 183
AU3
G
391 401Right-handed alpha
Helix 184
AU4
G
420 433Right-handed alpha
Helix 185
AU5
G
442 448Right-handed alpha
Helix 186
AU6
G
449 457Right-handed 310
Helix 187
AU7
G
473 478Right-handed alpha
Helix 188
AU8
G
484 489Right-handed alpha
Helix 189
AU9
G
497 504Right-handed alpha
Helix 190
AV1
G
513 525Right-handed alpha
Helix 191
AV2
G
540 555Right-handed alpha
Helix 192
AV3
H
2 20Right-handed alpha
Helix 193
AV4
H
34 44Right-handed alpha
Helix 194
AV5
H
54 70Right-handed alpha
Helix 195
AV6
H
80 85Right-handed alpha
Helix 196
AV7
H
86 97Right-handed alpha
Helix 197
AV8
H
108 112Right-handed 310
Helix 198
AV9
H
144 158Right-handed alpha
Helix 199
AW1
H
182 188Right-handed alpha
Helix 200
AW2
H
189 195Right-handed 310
Helix 201
AW3
H
213 218Right-handed alpha
Helix 202
AW4
H
230 245Right-handed alpha
Helix 203
AW5
H
262 267Right-handed alpha
Helix 204
AW6
H
269 277Right-handed alpha
Helix 205
AW7
H
291 301Right-handed alpha
Helix 206
AW8
H
329 337Right-handed alpha
Helix 207
AW9
H
348 362Right-handed alpha
Helix 208
AX1
H
368 375Right-handed alpha
Helix 209
AX2
H
376 380Right-handed 310
Helix 210
AX3
H
391 401Right-handed alpha
Helix 211
AX4
H
420 433Right-handed alpha
Helix 212
AX5
H
442 448Right-handed alpha
Helix 213
AX6
H
449 457Right-handed 310
Helix 214
AX7
H
473 478Right-handed alpha
Helix 215
AX8
H
481 489Right-handed alpha
Helix 216
AX9
H
497 504Right-handed alpha
Helix 217
AY1
H
513 525Right-handed alpha
Helix 218
AY2
H
540 555Right-handed alpha
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There are 28 sheets in PDB entry 5EJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 51first strand
Strand 2
A
25 28parallel
Strand 3
A
73 77parallel
Strand 4
A
100 106parallel
Strand 5
A
164 169parallel
Strand 6
A
132 135parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
200 201first strand
Strand 2
C
323 327parallel
Strand 3
C
305 310parallel
Strand 4
C
281 285parallel
Strand 5
C
222 226parallel
Strand 6
C
248 250parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 207first strand
Strand 2
C
205 207anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
248 250first strand
Strand 2
A
222 226parallel
Strand 3
A
281 285parallel
Strand 4
A
305 310parallel
Strand 5
A
323 327parallel
Strand 6
C
200 201parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
409 410first strand
Strand 2
A
385 388parallel
Strand 3
A
436 441parallel
Strand 4
A
462 468parallel
Strand 5
A
530 536parallel
Strand 6
A
507 509parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 51first strand
Strand 2
B
25 28parallel
Strand 3
B
73 77parallel
Strand 4
B
100 106parallel
Strand 5
B
164 169parallel
Strand 6
B
132 135parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
200 201first strand
Strand 2
D
323 327parallel
Strand 3
D
305 310parallel
Strand 4
D
281 285parallel
Strand 5
D
222 226parallel
Strand 6
D
248 250parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
205 207first strand
Strand 2
D
205 207anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
248 250first strand
Strand 2
B
222 226parallel
Strand 3
B
281 285parallel
Strand 4
B
305 310parallel
Strand 5
B
323 327parallel
Strand 6
D
200 201parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
409 410first strand
Strand 2
B
385 388parallel
Strand 3
B
436 441parallel
Strand 4
B
462 468parallel
Strand 5
B
530 536parallel
Strand 6
B
507 509parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 51first strand
Strand 2
C
25 28parallel
Strand 3
C
73 77parallel
Strand 4
C
100 106parallel
Strand 5
C
164 169parallel
Strand 6
C
132 135parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
409 410first strand
Strand 2
C
385 388parallel
Strand 3
C
436 441parallel
Strand 4
C
462 468parallel
Strand 5
C
530 536parallel
Strand 6
C
507 509parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
48 51first strand
Strand 2
D
25 28parallel
Strand 3
D
73 77parallel
Strand 4
D
100 106parallel
Strand 5
D
164 169parallel
Strand 6
D
132 135parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
409 410first strand
Strand 2
D
385 388parallel
Strand 3
D
436 441parallel
Strand 4
D
462 468parallel
Strand 5
D
530 536parallel
Strand 6
D
507 509parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
48 51first strand
Strand 2
E
25 28parallel
Strand 3
E
73 77parallel
Strand 4
E
100 106parallel
Strand 5
E
164 169parallel
Strand 6
E
132 135parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
200 201first strand
Strand 2
H
323 327parallel
Strand 3
H
305 310parallel
Strand 4
H
281 285parallel
Strand 5
H
222 226parallel
Strand 6
H
248 250parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
205 207first strand
Strand 2
H
205 207anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
248 250first strand
Strand 2
E
222 226parallel
Strand 3
E
281 285parallel
Strand 4
E
305 310parallel
Strand 5
E
323 327parallel
Strand 6
H
200 201parallel
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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
409 410first strand
Strand 2
E
385 388parallel
Strand 3
E
436 441parallel
Strand 4
E
462 468parallel
Strand 5
E
530 536parallel
Strand 6
E
507 509parallel
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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
48 51first strand
Strand 2
F
25 28parallel
Strand 3
F
73 77parallel
Strand 4
F
100 106parallel
Strand 5
F
164 169parallel
Strand 6
F
132 135parallel
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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
200 201first strand
Strand 2
G
323 327parallel
Strand 3
G
305 310parallel
Strand 4
G
281 285parallel
Strand 5
G
222 226parallel
Strand 6
G
248 250parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
205 207first strand
Strand 2
G
205 207anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
248 250first strand
Strand 2
F
222 226parallel
Strand 3
F
281 285parallel
Strand 4
F
305 310parallel
Strand 5
F
323 327parallel
Strand 6
G
200 201parallel
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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
409 410first strand
Strand 2
F
385 388parallel
Strand 3
F
436 441parallel
Strand 4
F
462 468parallel
Strand 5
F
530 536parallel
Strand 6
F
507 509parallel
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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
48 51first strand
Strand 2
G
25 28parallel
Strand 3
G
73 77parallel
Strand 4
G
100 106parallel
Strand 5
G
164 169parallel
Strand 6
G
132 135parallel
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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
409 410first strand
Strand 2
G
385 388parallel
Strand 3
G
436 441parallel
Strand 4
G
462 468parallel
Strand 5
G
530 536parallel
Strand 6
G
507 509parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
48 51first strand
Strand 2
H
25 28parallel
Strand 3
H
73 77parallel
Strand 4
H
100 106parallel
Strand 5
H
164 169parallel
Strand 6
H
132 135parallel
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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
409 410first strand
Strand 2
H
385 388parallel
Strand 3
H
436 441parallel
Strand 4
H
462 468parallel
Strand 5
H
530 536parallel
Strand 6
H
507 509parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il