Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJB entry

There are 3 chains in PDB entry 5EJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLY 26	GLU 476
C	GLY 26	SER 493
D	GLY 26	GLN 459

There are101 helices in PDB entry 5EJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	29	36	Right-handed alpha
Helix 2	AA2	B	68	72	Right-handed 310
Helix 3	AA3	B	74	101	Right-handed alpha
Helix 4	AA4	B	108	112	Right-handed 310
Helix 5	AA5	B	117	121	Right-handed alpha
Helix 6	AA6	B	125	146	Right-handed alpha
Helix 7	AA7	B	147	153	Right-handed alpha
Helix 8	AA8	B	175	182	Right-handed alpha
Helix 9	AA9	B	182	187	Right-handed alpha
Helix 10	AB1	B	194	215	Right-handed alpha
Helix 11	AB2	B	227	233	Right-handed alpha
Helix 12	AB3	B	234	236	Right-handed 310
Helix 13	AB4	B	238	247	Right-handed alpha
Helix 14	AB5	B	253	258	Right-handed alpha
Helix 15	AB6	B	328	331	Right-handed 310
Helix 16	AB7	B	349	357	Right-handed alpha
Helix 17	AB8	B	358	363	Right-handed 310
Helix 18	AB9	B	452	470	Right-handed alpha
Helix 19	AC1	C	29	36	Right-handed alpha
Helix 20	AC2	C	74	99	Right-handed alpha
Helix 21	AC3	C	117	121	Right-handed alpha
Helix 22	AC4	C	125	145	Right-handed alpha
Helix 23	AC5	C	147	153	Right-handed alpha
Helix 24	AC6	C	175	182	Right-handed alpha
Helix 25	AC7	C	182	187	Right-handed alpha
Helix 26	AC8	C	194	215	Right-handed alpha
Helix 27	AC9	C	227	233	Right-handed alpha
Helix 28	AD1	C	234	236	Right-handed 310
Helix 29	AD2	C	238	247	Right-handed alpha
Helix 30	AD3	C	253	258	Right-handed alpha
Helix 31	AD4	C	328	331	Right-handed 310
Helix 32	AD5	C	349	357	Right-handed alpha
Helix 33	AD6	C	358	363	Right-handed 310
Helix 34	AD7	C	452	470	Right-handed alpha
Helix 35	AD8	C	482	491	Right-handed alpha
Helix 36	AD9	D	29	36	Right-handed alpha
Helix 37	AE1	D	64	68	Right-handed 310
Helix 38	AE2	D	74	101	Right-handed alpha
Helix 39	AE3	D	117	121	Right-handed alpha
Helix 40	AE4	D	125	146	Right-handed alpha
Helix 41	AE5	D	147	153	Right-handed alpha
Helix 42	AE6	D	175	182	Right-handed alpha
Helix 43	AE7	D	191	215	Right-handed alpha
Helix 44	AE8	D	227	233	Right-handed alpha
Helix 45	AE9	D	234	236	Right-handed 310
Helix 46	AF1	D	238	247	Right-handed alpha
Helix 47	AF2	D	253	258	Right-handed alpha
Helix 48	AF3	D	328	331	Right-handed 310
Helix 49	AF4	D	349	357	Right-handed alpha
Helix 50	AF5	D	358	363	Right-handed 310
Helix 51	AF6	D	452	470	Right-handed alpha
Helix 52	AF7	D	482	488	Right-handed alpha
Helix 53	AF8	F	29	36	Right-handed alpha
Helix 54	AF9	F	65	69	Right-handed 310
Helix 55	AG1	F	75	101	Right-handed alpha
Helix 56	AG2	F	117	121	Right-handed alpha
Helix 57	AG3	F	125	146	Right-handed alpha
Helix 58	AG4	F	147	153	Right-handed alpha
Helix 59	AG5	F	175	182	Right-handed alpha
Helix 60	AG6	F	184	188	Right-handed 310
Helix 61	AG7	F	191	215	Right-handed alpha
Helix 62	AG8	F	227	233	Right-handed alpha
Helix 63	AG9	F	234	236	Right-handed 310
Helix 64	AH1	F	238	247	Right-handed alpha
Helix 65	AH2	F	253	258	Right-handed alpha
Helix 66	AH3	F	328	331	Right-handed 310
Helix 67	AH4	F	349	357	Right-handed alpha
Helix 68	AH5	F	358	363	Right-handed 310
Helix 69	AH6	F	452	470	Right-handed alpha
Helix 70	AH7	E	29	36	Right-handed alpha
Helix 71	AH8	E	74	99	Right-handed alpha
Helix 72	AH9	E	117	121	Right-handed alpha
Helix 73	AI1	E	125	146	Right-handed alpha
Helix 74	AI2	E	147	153	Right-handed alpha
Helix 75	AI3	E	175	182	Right-handed alpha
Helix 76	AI4	E	182	187	Right-handed alpha
Helix 77	AI5	E	191	215	Right-handed alpha
Helix 78	AI6	E	227	233	Right-handed alpha
Helix 79	AI7	E	234	236	Right-handed 310
Helix 80	AI8	E	238	247	Right-handed alpha
Helix 81	AI9	E	253	258	Right-handed alpha
Helix 82	AJ1	E	328	331	Right-handed 310
Helix 83	AJ2	E	349	357	Right-handed alpha
Helix 84	AJ3	E	358	363	Right-handed 310
Helix 85	AJ4	E	452	470	Right-handed alpha
Helix 86	AJ5	A	29	36	Right-handed alpha
Helix 87	AJ6	A	65	69	Right-handed 310
Helix 88	AJ7	A	74	101	Right-handed alpha
Helix 89	AJ8	A	117	121	Right-handed alpha
Helix 90	AJ9	A	125	146	Right-handed alpha
Helix 91	AK1	A	147	153	Right-handed alpha
Helix 92	AK2	A	175	182	Right-handed alpha
Helix 93	AK3	A	191	215	Right-handed alpha
Helix 94	AK4	A	227	233	Right-handed alpha
Helix 95	AK5	A	234	236	Right-handed 310
Helix 96	AK6	A	238	247	Right-handed alpha
Helix 97	AK7	A	253	258	Right-handed alpha
Helix 98	AK8	A	328	331	Right-handed 310
Helix 99	AK9	A	349	357	Right-handed alpha
Helix 100	AL1	A	358	363	Right-handed 310
Helix 101	AL2	A	452	470	Right-handed alpha

There are 30 sheets in PDB entry 5EJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	162	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	275	298	anti-parallel
Strand 5	B	337	340	first strand
Strand 6	B	332	334	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	270	first strand
Strand 2	B	275	298	anti-parallel
Strand 3	B	38	60	anti-parallel
Strand 4	B	315	319	first strand
Strand 5	B	322	326	anti-parallel
Strand 6	B	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	A	425	428	parallel
Strand 3	A	419	422	anti-parallel
Strand 4	A	392	394	anti-parallel
Strand 5	A	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	A	376	379	anti-parallel
Strand 3	A	382	385	anti-parallel
Strand 4	A	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	310	anti-parallel
Strand 3	B	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	401	first strand
Strand 2	B	392	394	anti-parallel
Strand 3	B	419	422	anti-parallel
Strand 4	B	425	428	anti-parallel
Strand 5	C	114	116	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	332	333	first strand
Strand 2	C	337	340	anti-parallel
Strand 3	C	38	50	parallel
Strand 4	C	284	298	anti-parallel
Strand 5	C	315	319	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	54	60	parallel
Strand 4	C	275	281	anti-parallel
Strand 5	C	263	270	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	310	anti-parallel
Strand 3	C	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	A	123	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	400	401	first strand
Strand 2	C	392	394	anti-parallel
Strand 3	C	419	422	anti-parallel
Strand 4	C	425	428	anti-parallel
Strand 5	A	114	116	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	38	60	parallel
Strand 4	D	275	298	anti-parallel
Strand 5	D	337	340	first strand
Strand 6	D	332	334	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	270	first strand
Strand 2	D	275	298	anti-parallel
Strand 3	D	38	60	anti-parallel
Strand 4	D	315	319	first strand
Strand 5	D	322	326	anti-parallel
Strand 6	D	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	F	425	428	parallel
Strand 3	F	419	422	anti-parallel
Strand 4	F	392	394	anti-parallel
Strand 5	F	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	F	376	379	anti-parallel
Strand 3	F	382	385	anti-parallel
Strand 4	F	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	303	first strand
Strand 2	D	306	310	anti-parallel
Strand 3	D	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	E	122	124	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	400	401	first strand
Strand 2	D	392	394	anti-parallel
Strand 3	D	419	422	anti-parallel
Strand 4	D	425	428	anti-parallel
Strand 5	E	115	116	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	162	first strand
Strand 2	F	168	173	anti-parallel
Strand 3	F	38	60	parallel
Strand 4	F	275	298	anti-parallel
Strand 5	F	337	340	first strand
Strand 6	F	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	263	270	first strand
Strand 2	F	275	298	anti-parallel
Strand 3	F	38	60	anti-parallel
Strand 4	F	315	319	first strand
Strand 5	F	322	326	anti-parallel
Strand 6	F	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	E	425	428	parallel
Strand 3	E	419	422	anti-parallel
Strand 4	E	392	394	anti-parallel
Strand 5	E	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	123	124	first strand
Strand 2	E	376	379	anti-parallel
Strand 3	E	382	385	anti-parallel
Strand 4	E	410	412	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	303	first strand
Strand 2	F	306	310	anti-parallel
Strand 3	F	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	162	first strand
Strand 2	E	168	173	anti-parallel
Strand 3	E	38	60	parallel
Strand 4	E	275	298	anti-parallel
Strand 5	E	337	340	first strand
Strand 6	E	332	333	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	263	270	first strand
Strand 2	E	275	298	anti-parallel
Strand 3	E	38	60	anti-parallel
Strand 4	E	315	319	first strand
Strand 5	E	322	326	anti-parallel
Strand 6	E	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	303	first strand
Strand 2	E	306	310	anti-parallel
Strand 3	E	365	367	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	38	50	parallel
Strand 4	A	284	298	anti-parallel
Strand 5	A	315	319	anti-parallel
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	54	60	parallel
Strand 4	A	275	281	anti-parallel
Strand 5	A	263	270	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	306	310	anti-parallel
Strand 3	A	365	367	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJB