Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJD entry

There are 16 chains in PDB entry 5EJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 20	ASP 484
A	LYS 2	VAL 76
D	GLU 20	ASP 484
C	LYS 2	ALA 75
F	GLU 20	LEU 483
E	GLN 3	VAL 74
H	GLU 20	LEU 483
G	LYS 2	VAL 76
J	GLU 20	ASP 484
I	GLN 3	VAL 74
L	GLU 20	LEU 483
K	LEU 4	VAL 76
N	GLU 20	LEU 483
M	LEU 4	SER 73
P	GLU 20	ASP 484
O	GLN 3	VAL 76

There are159 helices in PDB entry 5EJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	29	40	Right-handed alpha
Helix 2	AA2	B	56	65	Right-handed alpha
Helix 3	AA3	B	81	96	Right-handed alpha
Helix 4	AA4	B	97	99	Right-handed 310
Helix 5	AA5	B	132	144	Right-handed alpha
Helix 6	AA6	B	150	154	Right-handed 310
Helix 7	AA7	B	180	182	Right-handed 310
Helix 8	AA8	B	186	199	Right-handed alpha
Helix 9	AA9	B	208	219	Right-handed alpha
Helix 10	AB1	B	223	226	Right-handed 310
Helix 11	AB2	B	227	238	Right-handed alpha
Helix 12	AB3	B	283	300	Right-handed alpha
Helix 13	AB4	B	346	360	Right-handed alpha
Helix 14	AB5	B	368	377	Right-handed alpha
Helix 15	AB6	B	456	477	Right-handed alpha
Helix 16	AB7	A	6	21	Right-handed alpha
Helix 17	AB8	A	23	27	Right-handed 310
Helix 18	AB9	A	39	53	Right-handed alpha
Helix 19	AC1	A	58	65	Right-handed alpha
Helix 20	AC2	A	67	75	Right-handed alpha
Helix 21	AC3	D	29	40	Right-handed alpha
Helix 22	AC4	D	56	65	Right-handed alpha
Helix 23	AC5	D	81	96	Right-handed alpha
Helix 24	AC6	D	97	99	Right-handed 310
Helix 25	AC7	D	132	144	Right-handed alpha
Helix 26	AC8	D	150	154	Right-handed 310
Helix 27	AC9	D	180	182	Right-handed 310
Helix 28	AD1	D	186	199	Right-handed alpha
Helix 29	AD2	D	208	220	Right-handed alpha
Helix 30	AD3	D	223	226	Right-handed 310
Helix 31	AD4	D	227	238	Right-handed alpha
Helix 32	AD5	D	283	300	Right-handed alpha
Helix 33	AD6	D	346	360	Right-handed alpha
Helix 34	AD7	D	368	377	Right-handed alpha
Helix 35	AD8	D	456	477	Right-handed alpha
Helix 36	AD9	C	6	21	Right-handed alpha
Helix 37	AE1	C	23	27	Right-handed 310
Helix 38	AE2	C	39	53	Right-handed alpha
Helix 39	AE3	C	58	65	Right-handed alpha
Helix 40	AE4	C	67	72	Right-handed alpha
Helix 41	AE5	F	29	40	Right-handed alpha
Helix 42	AE6	F	56	65	Right-handed alpha
Helix 43	AE7	F	81	96	Right-handed alpha
Helix 44	AE8	F	97	99	Right-handed 310
Helix 45	AE9	F	132	144	Right-handed alpha
Helix 46	AF1	F	150	154	Right-handed 310
Helix 47	AF2	F	180	182	Right-handed 310
Helix 48	AF3	F	186	200	Right-handed alpha
Helix 49	AF4	F	208	219	Right-handed alpha
Helix 50	AF5	F	223	226	Right-handed 310
Helix 51	AF6	F	227	238	Right-handed alpha
Helix 52	AF7	F	283	300	Right-handed alpha
Helix 53	AF8	F	346	360	Right-handed alpha
Helix 54	AF9	F	368	377	Right-handed alpha
Helix 55	AG1	F	456	477	Right-handed alpha
Helix 56	AG2	E	6	21	Right-handed alpha
Helix 57	AG3	E	23	27	Right-handed 310
Helix 58	AG4	E	39	53	Right-handed alpha
Helix 59	AG5	E	58	65	Right-handed alpha
Helix 60	AG6	E	67	74	Right-handed alpha
Helix 61	AG7	H	29	40	Right-handed alpha
Helix 62	AG8	H	56	65	Right-handed alpha
Helix 63	AG9	H	81	96	Right-handed alpha
Helix 64	AH1	H	97	99	Right-handed 310
Helix 65	AH2	H	132	144	Right-handed alpha
Helix 66	AH3	H	150	154	Right-handed 310
Helix 67	AH4	H	180	182	Right-handed 310
Helix 68	AH5	H	186	200	Right-handed alpha
Helix 69	AH6	H	208	219	Right-handed alpha
Helix 70	AH7	H	227	238	Right-handed alpha
Helix 71	AH8	H	283	300	Right-handed alpha
Helix 72	AH9	H	346	360	Right-handed alpha
Helix 73	AI1	H	368	377	Right-handed alpha
Helix 74	AI2	H	456	477	Right-handed alpha
Helix 75	AI3	G	6	20	Right-handed alpha
Helix 76	AI4	G	23	27	Right-handed 310
Helix 77	AI5	G	39	53	Right-handed alpha
Helix 78	AI6	G	58	65	Right-handed alpha
Helix 79	AI7	G	67	73	Right-handed alpha
Helix 80	AI8	J	29	40	Right-handed alpha
Helix 81	AI9	J	56	65	Right-handed alpha
Helix 82	AJ1	J	81	96	Right-handed alpha
Helix 83	AJ2	J	97	99	Right-handed 310
Helix 84	AJ3	J	132	144	Right-handed alpha
Helix 85	AJ4	J	150	154	Right-handed 310
Helix 86	AJ5	J	180	182	Right-handed 310
Helix 87	AJ6	J	186	200	Right-handed alpha
Helix 88	AJ7	J	208	219	Right-handed alpha
Helix 89	AJ8	J	223	226	Right-handed 310
Helix 90	AJ9	J	227	238	Right-handed alpha
Helix 91	AK1	J	283	300	Right-handed alpha
Helix 92	AK2	J	346	360	Right-handed alpha
Helix 93	AK3	J	368	377	Right-handed alpha
Helix 94	AK4	J	456	477	Right-handed alpha
Helix 95	AK5	I	6	21	Right-handed alpha
Helix 96	AK6	I	23	27	Right-handed 310
Helix 97	AK7	I	39	53	Right-handed alpha
Helix 98	AK8	I	58	65	Right-handed alpha
Helix 99	AK9	I	67	74	Right-handed alpha
Helix 100	AL1	L	29	40	Right-handed alpha
Helix 101	AL2	L	56	65	Right-handed alpha
Helix 102	AL3	L	81	96	Right-handed alpha
Helix 103	AL4	L	97	99	Right-handed 310
Helix 104	AL5	L	132	144	Right-handed alpha
Helix 105	AL6	L	150	154	Right-handed 310
Helix 106	AL7	L	180	182	Right-handed 310
Helix 107	AL8	L	186	200	Right-handed alpha
Helix 108	AL9	L	208	219	Right-handed alpha
Helix 109	AM1	L	223	226	Right-handed 310
Helix 110	AM2	L	227	238	Right-handed alpha
Helix 111	AM3	L	283	300	Right-handed alpha
Helix 112	AM4	L	346	360	Right-handed alpha
Helix 113	AM5	L	368	377	Right-handed alpha
Helix 114	AM6	L	456	477	Right-handed alpha
Helix 115	AM7	K	6	20	Right-handed alpha
Helix 116	AM8	K	23	27	Right-handed 310
Helix 117	AM9	K	39	53	Right-handed alpha
Helix 118	AN1	K	58	65	Right-handed alpha
Helix 119	AN2	K	67	72	Right-handed alpha
Helix 120	AN3	N	29	40	Right-handed alpha
Helix 121	AN4	N	56	65	Right-handed alpha
Helix 122	AN5	N	81	96	Right-handed alpha
Helix 123	AN6	N	97	99	Right-handed 310
Helix 124	AN7	N	132	144	Right-handed alpha
Helix 125	AN8	N	150	154	Right-handed 310
Helix 126	AN9	N	180	182	Right-handed 310
Helix 127	AO1	N	186	200	Right-handed alpha
Helix 128	AO2	N	208	219	Right-handed alpha
Helix 129	AO3	N	223	226	Right-handed 310
Helix 130	AO4	N	227	238	Right-handed alpha
Helix 131	AO5	N	283	300	Right-handed alpha
Helix 132	AO6	N	346	360	Right-handed alpha
Helix 133	AO7	N	368	377	Right-handed alpha
Helix 134	AO8	N	456	477	Right-handed alpha
Helix 135	AO9	M	6	21	Right-handed alpha
Helix 136	AP1	M	23	27	Right-handed 310
Helix 137	AP2	M	39	53	Right-handed alpha
Helix 138	AP3	M	58	65	Right-handed alpha
Helix 139	AP4	M	67	72	Right-handed alpha
Helix 140	AP5	P	29	40	Right-handed alpha
Helix 141	AP6	P	56	65	Right-handed alpha
Helix 142	AP7	P	81	96	Right-handed alpha
Helix 143	AP8	P	97	99	Right-handed 310
Helix 144	AP9	P	132	144	Right-handed alpha
Helix 145	AQ1	P	150	154	Right-handed 310
Helix 146	AQ2	P	180	182	Right-handed 310
Helix 147	AQ3	P	186	200	Right-handed alpha
Helix 148	AQ4	P	208	219	Right-handed alpha
Helix 149	AQ5	P	223	226	Right-handed 310
Helix 150	AQ6	P	227	238	Right-handed alpha
Helix 151	AQ7	P	283	300	Right-handed alpha
Helix 152	AQ8	P	346	360	Right-handed alpha
Helix 153	AQ9	P	368	377	Right-handed alpha
Helix 154	AR1	P	456	477	Right-handed alpha
Helix 155	AR2	O	6	21	Right-handed alpha
Helix 156	AR3	O	23	27	Right-handed 310
Helix 157	AR4	O	39	53	Right-handed alpha
Helix 158	AR5	O	58	65	Right-handed alpha
Helix 159	AR6	O	67	75	Right-handed alpha

There are 22 sheets in PDB entry 5EJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	54	first strand
Strand 2	B	109	116	anti-parallel
Strand 3	B	101	106	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	126	first strand
Strand 2	B	159	164	parallel
Strand 3	B	170	178	anti-parallel
Strand 4	B	68	76	anti-parallel
Strand 5	B	418	426	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	273	first strand
Strand 2	B	444	451	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	387	391	parallel
Strand 5	B	304	311	parallel
Strand 6	B	330	337	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	54	first strand
Strand 2	D	109	116	anti-parallel
Strand 3	D	101	106	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	426	first strand
Strand 2	D	68	76	anti-parallel
Strand 3	D	170	178	anti-parallel
Strand 4	D	159	164	anti-parallel
Strand 5	D	123	126	parallel
Strand 6	F	123	126	anti-parallel
Strand 7	F	159	164	parallel
Strand 8	F	170	178	anti-parallel
Strand 9	F	68	76	anti-parallel
Strand 10	F	418	426	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	273	first strand
Strand 2	D	444	451	anti-parallel
Strand 3	D	433	439	anti-parallel
Strand 4	D	387	391	parallel
Strand 5	D	304	311	parallel
Strand 6	D	330	337	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	54	first strand
Strand 2	F	109	116	anti-parallel
Strand 3	F	101	106	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	266	273	first strand
Strand 2	F	444	451	anti-parallel
Strand 3	F	433	439	anti-parallel
Strand 4	F	387	391	parallel
Strand 5	F	304	311	parallel
Strand 6	F	330	337	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	54	first strand
Strand 2	H	109	116	anti-parallel
Strand 3	H	101	106	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	418	426	first strand
Strand 2	H	68	76	anti-parallel
Strand 3	H	170	178	anti-parallel
Strand 4	H	159	164	anti-parallel
Strand 5	H	123	126	parallel
Strand 6	P	123	126	anti-parallel
Strand 7	P	159	164	parallel
Strand 8	P	170	178	anti-parallel
Strand 9	P	68	76	anti-parallel
Strand 10	P	418	426	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	266	273	first strand
Strand 2	H	444	451	anti-parallel
Strand 3	H	433	439	anti-parallel
Strand 4	H	387	391	parallel
Strand 5	H	304	311	parallel
Strand 6	H	330	337	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	54	first strand
Strand 2	J	109	116	anti-parallel
Strand 3	J	101	106	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	126	first strand
Strand 2	J	159	164	parallel
Strand 3	J	170	178	anti-parallel
Strand 4	J	68	76	anti-parallel
Strand 5	J	418	426	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	266	273	first strand
Strand 2	J	444	451	anti-parallel
Strand 3	J	433	439	anti-parallel
Strand 4	J	387	391	parallel
Strand 5	J	304	311	parallel
Strand 6	J	330	337	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	54	first strand
Strand 2	L	109	116	anti-parallel
Strand 3	L	101	106	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	123	126	first strand
Strand 2	L	159	164	parallel
Strand 3	L	170	178	anti-parallel
Strand 4	L	68	76	anti-parallel
Strand 5	L	418	426	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	266	273	first strand
Strand 2	L	444	451	anti-parallel
Strand 3	L	433	439	anti-parallel
Strand 4	L	387	391	parallel
Strand 5	L	304	311	parallel
Strand 6	L	330	337	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	48	54	first strand
Strand 2	N	109	116	anti-parallel
Strand 3	N	101	106	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	123	126	first strand
Strand 2	N	159	164	parallel
Strand 3	N	170	178	anti-parallel
Strand 4	N	68	76	anti-parallel
Strand 5	N	418	426	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	266	273	first strand
Strand 2	N	444	451	anti-parallel
Strand 3	N	433	439	anti-parallel
Strand 4	N	387	391	parallel
Strand 5	N	304	311	parallel
Strand 6	N	330	337	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	48	54	first strand
Strand 2	P	109	116	anti-parallel
Strand 3	P	101	106	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	266	273	first strand
Strand 2	P	444	451	anti-parallel
Strand 3	P	433	439	anti-parallel
Strand 4	P	387	391	parallel
Strand 5	P	304	311	parallel
Strand 6	P	330	337	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJD